miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 42663 1.07 0.027268
Target:  5'- gAACCCGGCUGACUUUUCAUUAACAUGu -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104516 0.92 0.208763
Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 112569 0.92 0.208763
Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89482 0.84 0.515364
Target:  5'- aAACCCGGCcGACUUUUCGUgguuaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 112472 0.8 0.703884
Target:  5'- gAACCUGGCUGACUUUUCAUa------ -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 76479 0.8 0.72572
Target:  5'- gAACCUGGCcGACUUUUCGUUGAUuguAUGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUG---UAC- -5'
11692 5' -46.2 NC_003102.1 + 103480 0.78 0.788511
Target:  5'- gAACCUGGCcGACUUUUCGUgcucaAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 112653 0.77 0.836299
Target:  5'- gAACCUGuCUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- -UUGGGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26134 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26193 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54594 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUUuUUGACGUu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGuAAUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 67210 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUCGauauucaUAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUa------AUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54789 0.73 0.960518
Target:  5'- gAACCUGGCUGACUUUUUAg------- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaauuguac -5'
11692 5' -46.2 NC_003102.1 + 61379 0.73 0.960518
Target:  5'- aAACCUGGCcGACUUUUUGUaAACAUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 42895 0.73 0.964281
Target:  5'- gAACCUGGCcGACUUUUUGUgAAUAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54561 0.73 0.964281
Target:  5'- aAACuuGuaUGACUUUUCAUgAACAUGa -3'
miRNA:   3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 121813 0.73 0.967786
Target:  5'- gAACCUGGCcGACUUUucgauaagUCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA--------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42674 0.72 0.971039
Target:  5'- uAACuuG-CUGACUUUUCAUUGaACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAAU-UGUAC- -5'
11692 5' -46.2 NC_003102.1 + 67398 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUucguaauaagUCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 67113 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUUCAUaucACAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAau-UGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.