miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 42674 0.72 0.971039
Target:  5'- uAACuuG-CUGACUUUUCAUUGaACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAAU-UGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42728 0.66 0.999813
Target:  5'- cAACuuGuCUGACUUUUCGUgAACAUu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 42796 0.67 0.999369
Target:  5'- cAACuuGcCUGACUUUUUAUgAACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42895 0.73 0.964281
Target:  5'- gAACCUGGCcGACUUUUUGUgAAUAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54314 0.67 0.999603
Target:  5'- cAACuuGGCcGACUUUUCAaaguauaAACGUGu -3'
miRNA:   3'- -UUGggCCGaCUGAAAAGUaa-----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54561 0.73 0.964281
Target:  5'- aAACuuGuaUGACUUUUCAUgAACAUGa -3'
miRNA:   3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54594 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUUuUUGACGUu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGuAAUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 54789 0.73 0.960518
Target:  5'- gAACCUGGCUGACUUUUUAg------- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaauuguac -5'
11692 5' -46.2 NC_003102.1 + 55993 0.71 0.983849
Target:  5'- gAACCUGGCcGACUUUucaaaauaaaUCAUaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 56218 0.68 0.999024
Target:  5'- gAACgUGuCUGACUUUUCGUaAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 61379 0.73 0.960518
Target:  5'- aAACCUGGCcGACUUUUUGUaAACAUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 61601 0.69 0.996296
Target:  5'- gAACCUGGCaGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 66980 0.66 0.999891
Target:  5'- aAACgUGuCUGACUUUUCGUUAACu-- -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGuac -5'
11692 5' -46.2 NC_003102.1 + 67113 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUUCAUaucACAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAau-UGUac -5'
11692 5' -46.2 NC_003102.1 + 67210 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUCGauauucaUAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUa------AUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 67308 0.71 0.989126
Target:  5'- gAACCUGGCcGACUUUUCGaUaagcgaucGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUaA--------UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 67398 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUucguaauaagUCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 76352 0.7 0.992951
Target:  5'- gAACCUGGCcGACUUUUCGUaaauuuUAAUGUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUA------AUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 76479 0.8 0.72572
Target:  5'- gAACCUGGCcGACUUUUCGUUGAUuguAUGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUG---UAC- -5'
11692 5' -46.2 NC_003102.1 + 89259 0.66 0.999918
Target:  5'- gAACauGuCUGACUUUUCAUaGACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.