miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 112472 0.8 0.703884
Target:  5'- gAACCUGGCUGACUUUUCAUa------ -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 76479 0.8 0.72572
Target:  5'- gAACCUGGCcGACUUUUCGUUGAUuguAUGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUG---UAC- -5'
11692 5' -46.2 NC_003102.1 + 103480 0.78 0.788511
Target:  5'- gAACCUGGCcGACUUUUCGUgcucaAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 112653 0.77 0.836299
Target:  5'- gAACCUGuCUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- -UUGGGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26134 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104287 0.72 0.981716
Target:  5'- uAACCUGGUUGACUUUUCGaUAAg--- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaAUUguac -5'
11692 5' -46.2 NC_003102.1 + 104636 0.72 0.979379
Target:  5'- gAACCUGGCcGACUUUUUGUUGAUu-- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGuac -5'
11692 5' -46.2 NC_003102.1 + 103598 0.72 0.979379
Target:  5'- gAACCUGGCcGACUUUUugacCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAA----GUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54561 0.73 0.964281
Target:  5'- aAACuuGuaUGACUUUUCAUgAACAUGa -3'
miRNA:   3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 61379 0.73 0.960518
Target:  5'- aAACCUGGCcGACUUUUUGUaAACAUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 26193 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104482 0.68 0.999024
Target:  5'- gAACgUGuCUGACUUUUCGUgGACGUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 97839 0.68 0.999024
Target:  5'- gAACgUGGCcGACUUUUCGUgAACGUc -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 42796 0.67 0.999369
Target:  5'- cAACuuGcCUGACUUUUUAUgAACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 36230 0.67 0.999603
Target:  5'- gAACgUGGCcGACUUUUCAUguACAUu -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUAauUGUAc -5'
11692 5' -46.2 NC_003102.1 + 42728 0.66 0.999813
Target:  5'- cAACuuGuCUGACUUUUCGUgAACAUu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 103730 0.66 0.999813
Target:  5'- aAACgUGuCUGACUUUUCGcgGACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUaaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26107 0.66 0.999813
Target:  5'- gAACCUGGCcGACUUUUUGUgcuCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 26326 0.66 0.999813
Target:  5'- gAAUuuGGCcGACUUUuuggUCAUcGACAUGu -3'
miRNA:   3'- -UUGggCCGaCUGAAA----AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89482 0.84 0.515364
Target:  5'- aAACCCGGCcGACUUUUCGUgguuaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.