miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 89392 0.71 0.983849
Target:  5'- aAACuuGGCUGACUUUUgGaUAAUAUa -3'
miRNA:   3'- -UUGggCCGACUGAAAAgUaAUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 26048 0.72 0.976827
Target:  5'- aAACCUGGCcGACUUUUCGUgauCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 112899 0.72 0.979379
Target:  5'- cAACuuGuaUGACUUUUCAUaAACAUGu -3'
miRNA:   3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 25968 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUUCGUgauCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 67113 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUUCAUaucACAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAau-UGUac -5'
11692 5' -46.2 NC_003102.1 + 67398 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUucguaauaagUCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42674 0.72 0.971039
Target:  5'- uAACuuG-CUGACUUUUCAUUGaACAUGu -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAAU-UGUAC- -5'
11692 5' -46.2 NC_003102.1 + 121813 0.73 0.967786
Target:  5'- gAACCUGGCcGACUUUucgauaagUCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA--------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42895 0.73 0.964281
Target:  5'- gAACCUGGCcGACUUUUUGUgAAUAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 54789 0.73 0.960518
Target:  5'- gAACCUGGCUGACUUUUUAg------- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaauuguac -5'
11692 5' -46.2 NC_003102.1 + 54594 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUUuUUGACGUu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGuAAUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 67210 0.74 0.947615
Target:  5'- gAACCUGGCcGACUUUUCGauauucaUAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUa------AUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89482 0.84 0.515364
Target:  5'- aAACCCGGCcGACUUUUCGUgguuaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 33002 0.66 0.999891
Target:  5'- cAGCCCGGCUGGCc---CAgUAGCu-- -3'
miRNA:   3'- -UUGGGCCGACUGaaaaGUaAUUGuac -5'
11692 5' -46.2 NC_003102.1 + 55993 0.71 0.983849
Target:  5'- gAACCUGGCcGACUUUucaaaauaaaUCAUaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104516 0.92 0.208763
Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 103539 0.72 0.981716
Target:  5'- aAACCUGGCcGACUUUUugacCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAA----GUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104287 0.72 0.981716
Target:  5'- uAACCUGGUUGACUUUUCGaUAAg--- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaAUUguac -5'
11692 5' -46.2 NC_003102.1 + 104636 0.72 0.979379
Target:  5'- gAACCUGGCcGACUUUUUGUUGAUu-- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGuac -5'
11692 5' -46.2 NC_003102.1 + 103598 0.72 0.979379
Target:  5'- gAACCUGGCcGACUUUUugacCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAA----GUAaUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.