miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 54561 0.73 0.964281
Target:  5'- aAACuuGuaUGACUUUUCAUgAACAUGa -3'
miRNA:   3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 61379 0.73 0.960518
Target:  5'- aAACCUGGCcGACUUUUUGUaAACAUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAaUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 26193 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26134 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 112653 0.77 0.836299
Target:  5'- gAACCUGuCUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- -UUGGGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 103480 0.78 0.788511
Target:  5'- gAACCUGGCcGACUUUUCGUgcucaAACGUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 76479 0.8 0.72572
Target:  5'- gAACCUGGCcGACUUUUCGUUGAUuguAUGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUG---UAC- -5'
11692 5' -46.2 NC_003102.1 + 112472 0.8 0.703884
Target:  5'- gAACCUGGCUGACUUUUCAUa------ -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 112569 0.92 0.208763
Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 42663 1.07 0.027268
Target:  5'- gAACCCGGCUGACUUUUCAUUAACAUGu -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26765 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUaAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26894 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89508 0.71 0.989126
Target:  5'- gAACgUGGCUGACUUUUCGUagAAUcUGg -3'
miRNA:   3'- -UUGgGCCGACUGAAAAGUAa-UUGuAC- -5'
11692 5' -46.2 NC_003102.1 + 10518 0.7 0.992951
Target:  5'- gAACgUGuCUGACUUUUCGUaGACAUGg -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 76352 0.7 0.992951
Target:  5'- gAACCUGGCcGACUUUUCGUaaauuuUAAUGUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUA------AUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 104350 0.69 0.997396
Target:  5'- gAACCUGGCcGACUUUUUAgaUGACGc- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUa-AUUGUac -5'
11692 5' -46.2 NC_003102.1 + 26579 0.68 0.999024
Target:  5'- gAACgUGuCUGACUUUUCGUgGACGUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 132060 0.68 0.999024
Target:  5'- aAACgCGGCcGACUUUUUAaaAACAUGu -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUaaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 25836 0.68 0.999024
Target:  5'- gAACgUGGCcGACUUUUCGUaAACAg- -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUAaUUGUac -5'
11692 5' -46.2 NC_003102.1 + 97707 0.67 0.999498
Target:  5'- cAACuuGuCUGACUUUUCAUaGACAg- -3'
miRNA:   3'- -UUGggCcGACUGAAAAGUAaUUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.