Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11692 | 5' | -46.2 | NC_003102.1 | + | 121813 | 0.73 | 0.967786 |
Target: 5'- gAACCUGGCcGACUUUucgauaagUCAUcGACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAA--------AGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 121893 | 0.69 | 0.995617 |
Target: 5'- gAACCUGGCcGACUUUUCGUa------ -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAauuguac -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 132060 | 0.68 | 0.999024 |
Target: 5'- aAACgCGGCcGACUUUUUAaaAACAUGu -3' miRNA: 3'- -UUGgGCCGaCUGAAAAGUaaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 137295 | 0.68 | 0.998209 |
Target: 5'- aAACgUGuCUGACUUUUCGUgGACAUGu -3' miRNA: 3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 137448 | 0.68 | 0.998209 |
Target: 5'- aAACgUGuCUGACUUUUCGUgGACAUGu -3' miRNA: 3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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