miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11693 5' -52 NC_003102.1 + 121269 0.66 0.985099
Target:  5'- cCGC----ACGGCGUCGuc--GCCGACa -3'
miRNA:   3'- -GCGaauuUGCCGCAGCcgaaUGGCUG- -5'
11693 5' -52 NC_003102.1 + 113006 0.66 0.981165
Target:  5'- gGCgguGGUGGUGUCGGCggUGgCGGCa -3'
miRNA:   3'- gCGaauUUGCCGCAGCCGa-AUgGCUG- -5'
11693 5' -52 NC_003102.1 + 134382 0.66 0.981165
Target:  5'- gGCggcGGCGGCGgucgcaagaauUUGGCgccGCCGGCg -3'
miRNA:   3'- gCGaauUUGCCGC-----------AGCCGaa-UGGCUG- -5'
11693 5' -52 NC_003102.1 + 128717 0.66 0.978928
Target:  5'- gCGCguauAGCGGCGaCGGCguuguuaauUCGACa -3'
miRNA:   3'- -GCGaau-UUGCCGCaGCCGaau------GGCUG- -5'
11693 5' -52 NC_003102.1 + 87449 0.66 0.9765
Target:  5'- gGC---GACGGCGgUGGC--ACCGACu -3'
miRNA:   3'- gCGaauUUGCCGCaGCCGaaUGGCUG- -5'
11693 5' -52 NC_003102.1 + 95897 0.67 0.973873
Target:  5'- aCGC--GAACGGCGUCuaCUcgGCCGAUu -3'
miRNA:   3'- -GCGaaUUUGCCGCAGccGAa-UGGCUG- -5'
11693 5' -52 NC_003102.1 + 95197 0.67 0.967991
Target:  5'- aGCUUGgugcacgccGACGacGCGUCuuuGGCgucUACCGACg -3'
miRNA:   3'- gCGAAU---------UUGC--CGCAG---CCGa--AUGGCUG- -5'
11693 5' -52 NC_003102.1 + 23695 0.67 0.964723
Target:  5'- gGCgUAGGCGGCGcguccaaCGGUcucgUGCCGAUg -3'
miRNA:   3'- gCGaAUUUGCCGCa------GCCGa---AUGGCUG- -5'
11693 5' -52 NC_003102.1 + 79603 0.68 0.957498
Target:  5'- uCGC---GACGGCGUCGuGCUcAaaGACg -3'
miRNA:   3'- -GCGaauUUGCCGCAGC-CGAaUggCUG- -5'
11693 5' -52 NC_003102.1 + 114430 0.68 0.957498
Target:  5'- uGuCUUGGAUcGCGUCGaGUUUugCGACu -3'
miRNA:   3'- gC-GAAUUUGcCGCAGC-CGAAugGCUG- -5'
11693 5' -52 NC_003102.1 + 129190 0.68 0.949322
Target:  5'- aCGCaggacgaguAGCGGCGgcCGGC--GCCGACg -3'
miRNA:   3'- -GCGaau------UUGCCGCa-GCCGaaUGGCUG- -5'
11693 5' -52 NC_003102.1 + 89085 0.68 0.949322
Target:  5'- uGUUUcGACGGCGccgaCGGCUUcggACaCGACa -3'
miRNA:   3'- gCGAAuUUGCCGCa---GCCGAA---UG-GCUG- -5'
11693 5' -52 NC_003102.1 + 75777 0.68 0.944867
Target:  5'- cCGau--GAUGGUGUCGGCgauuCCGAUa -3'
miRNA:   3'- -GCgaauUUGCCGCAGCCGaau-GGCUG- -5'
11693 5' -52 NC_003102.1 + 120946 0.68 0.944408
Target:  5'- uCGaCUUGAAuguaaccCGGCGgacaCGGCgcgACCGGCa -3'
miRNA:   3'- -GC-GAAUUU-------GCCGCa---GCCGaa-UGGCUG- -5'
11693 5' -52 NC_003102.1 + 6659 0.69 0.935208
Target:  5'- uGCUgguGACguuGGCGUUGGCgUUGCCGcugGCg -3'
miRNA:   3'- gCGAau-UUG---CCGCAGCCG-AAUGGC---UG- -5'
11693 5' -52 NC_003102.1 + 135092 0.69 0.924538
Target:  5'- gGCgacGACGGCGgUGGCUgguUCGACg -3'
miRNA:   3'- gCGaauUUGCCGCaGCCGAau-GGCUG- -5'
11693 5' -52 NC_003102.1 + 88797 0.69 0.924538
Target:  5'- uCGUUgAAACGGCGUCacGUUgauugACCGGCg -3'
miRNA:   3'- -GCGAaUUUGCCGCAGc-CGAa----UGGCUG- -5'
11693 5' -52 NC_003102.1 + 74004 0.7 0.906634
Target:  5'- uGUUUcg--GGCGUCGGCaUAUCGGCg -3'
miRNA:   3'- gCGAAuuugCCGCAGCCGaAUGGCUG- -5'
11693 5' -52 NC_003102.1 + 134772 0.7 0.879294
Target:  5'- uGCUgcccgcCGGCGUCGGCguguugAgCGGCg -3'
miRNA:   3'- gCGAauuu--GCCGCAGCCGaa----UgGCUG- -5'
11693 5' -52 NC_003102.1 + 17741 0.71 0.864205
Target:  5'- gGCggcGGCGGCGgCGGCggUGCCGGu -3'
miRNA:   3'- gCGaauUUGCCGCaGCCGa-AUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.