miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11695 3' -51.3 NC_003102.1 + 14797 0.66 0.99084
Target:  5'- ---cGAGCGGcGGCAGCGGuuUCGAa- -3'
miRNA:   3'- accuUUUGCCuCCGUUGCCu-AGCUgu -5'
11695 3' -51.3 NC_003102.1 + 87420 0.66 0.987145
Target:  5'- uUGGAAauGAUGGAagaucgaucgacgucGGCGACGGcggUGGCAc -3'
miRNA:   3'- -ACCUU--UUGCCU---------------CCGUUGCCua-GCUGU- -5'
11695 3' -51.3 NC_003102.1 + 102027 0.67 0.982802
Target:  5'- cGGu-GGCGGuGGCGGCGGuguuGUCGGu- -3'
miRNA:   3'- aCCuuUUGCCuCCGUUGCC----UAGCUgu -5'
11695 3' -51.3 NC_003102.1 + 65254 0.67 0.982802
Target:  5'- cGGGccgAAGCGGAGGaGGCGGcgauaGACAg -3'
miRNA:   3'- aCCU---UUUGCCUCCgUUGCCuag--CUGU- -5'
11695 3' -51.3 NC_003102.1 + 41626 0.67 0.98219
Target:  5'- cUGGGAGuuuccCGGAGGCAA-GGGcgcuaauccuucgcUCGGCGa -3'
miRNA:   3'- -ACCUUUu----GCCUCCGUUgCCU--------------AGCUGU- -5'
11695 3' -51.3 NC_003102.1 + 111787 0.67 0.980697
Target:  5'- -uGAAAACgaucugGGAGGCGGCGcaggaGUCGACAc -3'
miRNA:   3'- acCUUUUG------CCUCCGUUGCc----UAGCUGU- -5'
11695 3' -51.3 NC_003102.1 + 131474 0.67 0.980697
Target:  5'- uUGGGAcgaGACGauGGCgGACGGAUCGAgAa -3'
miRNA:   3'- -ACCUU---UUGCcuCCG-UUGCCUAGCUgU- -5'
11695 3' -51.3 NC_003102.1 + 72711 0.67 0.97323
Target:  5'- gUGGAAAugguaGCGGcGGCGGCGGcaaCGAUu -3'
miRNA:   3'- -ACCUUU-----UGCCuCCGUUGCCua-GCUGu -5'
11695 3' -51.3 NC_003102.1 + 37876 0.67 0.97323
Target:  5'- cGGGcgGCGGcGGCGGCGGcggUGAUg -3'
miRNA:   3'- aCCUuuUGCCuCCGUUGCCua-GCUGu -5'
11695 3' -51.3 NC_003102.1 + 91536 0.68 0.970329
Target:  5'- gGGGGAGuCGGAGGaugaGGCGGA--GGCAu -3'
miRNA:   3'- aCCUUUU-GCCUCCg---UUGCCUagCUGU- -5'
11695 3' -51.3 NC_003102.1 + 42358 0.68 0.96721
Target:  5'- gUGGAAcggcGGCGGAGGCGAUGaagCGuACGu -3'
miRNA:   3'- -ACCUU----UUGCCUCCGUUGCcuaGC-UGU- -5'
11695 3' -51.3 NC_003102.1 + 36118 0.68 0.96721
Target:  5'- cGGAuccaAAGCGGcuGCGGCGgGAUCGAg- -3'
miRNA:   3'- aCCU----UUUGCCucCGUUGC-CUAGCUgu -5'
11695 3' -51.3 NC_003102.1 + 1651 0.68 0.956084
Target:  5'- gUGGuaAAggUGGuGGCGGCGGcgguaaaauuuguGUCGGCAg -3'
miRNA:   3'- -ACC--UUuuGCCuCCGUUGCC-------------UAGCUGU- -5'
11695 3' -51.3 NC_003102.1 + 36537 0.71 0.891159
Target:  5'- uUGGAuacCGGAcGGcCGACGGAUCGGu- -3'
miRNA:   3'- -ACCUuuuGCCU-CC-GUUGCCUAGCUgu -5'
11695 3' -51.3 NC_003102.1 + 45843 0.71 0.884079
Target:  5'- cGGAAGcgGCGauagaaGAGGCAGCGGcggCGGCGg -3'
miRNA:   3'- aCCUUU--UGC------CUCCGUUGCCua-GCUGU- -5'
11695 3' -51.3 NC_003102.1 + 60181 0.71 0.884079
Target:  5'- cGGAAGcgGCGauagaaGAGGCAGCGGcggCGGCGg -3'
miRNA:   3'- aCCUUU--UGC------CUCCGUUGCCua-GCUGU- -5'
11695 3' -51.3 NC_003102.1 + 72376 0.71 0.869205
Target:  5'- cGGGcgccgagaacguGAGCGGAGGCAgcguagccgaaGCGGccCGACAu -3'
miRNA:   3'- aCCU------------UUUGCCUCCGU-----------UGCCuaGCUGU- -5'
11695 3' -51.3 NC_003102.1 + 111598 0.72 0.83677
Target:  5'- cGGAGAcaaaaGCGGAggaGGCGGCGGcggCGGCGu -3'
miRNA:   3'- aCCUUU-----UGCCU---CCGUUGCCua-GCUGU- -5'
11695 3' -51.3 NC_003102.1 + 1603 0.72 0.819323
Target:  5'- gUGGugguGGCGGAGGCAugauCGGAggaGGCGg -3'
miRNA:   3'- -ACCuu--UUGCCUCCGUu---GCCUag-CUGU- -5'
11695 3' -51.3 NC_003102.1 + 17725 0.73 0.801147
Target:  5'- -aGAAGGCGGcGGCGGCGGcggCGGCGg -3'
miRNA:   3'- acCUUUUGCCuCCGUUGCCua-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.