miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 132557 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55321 0.73 0.993852
Target:  5'- -aAACuUGUUgGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAGgCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54717 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 36096 0.74 0.989023
Target:  5'- cGAACcUGUCUGACUUUUUaUAAACUu -3'
miRNA:   3'- aCUUGcACAGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 67399 0.74 0.987446
Target:  5'- cGAACcUGgCCGACUUUUCGUAAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 25969 0.75 0.985698
Target:  5'- cGAACcUGgCCGACUUUUCGUGAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 121958 0.75 0.985698
Target:  5'- uUGAACGUGgCCGACUugUUUCGauuACUa -3'
miRNA:   3'- -ACUUGCACaGGCUGA--AAAGCauuUGA- -5'
11699 3' -44.4 NC_003102.1 + 137193 0.75 0.983771
Target:  5'- cGAACGUGgCCaACUUUUCGUGuACa -3'
miRNA:   3'- aCUUGCACaGGcUGAAAAGCAUuUGa -5'
11699 3' -44.4 NC_003102.1 + 61512 0.75 0.981653
Target:  5'- cGAACGUGUCUGACUUUcuuuaaGUcuACUa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAag----CAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 54797 0.75 0.981653
Target:  5'- aUGAACaUGUuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55411 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55128 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54892 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54861 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54829 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103044 0.75 0.979334
Target:  5'- aGAACGUGUCaGAUUUgggCGUGGACc -3'
miRNA:   3'- aCUUGCACAGgCUGAAaa-GCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67309 0.75 0.979334
Target:  5'- cGAACcUGgCCGACUUUUCGaUAAGCg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGC-AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132969 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42761 0.75 0.976805
Target:  5'- uUGAACGcGUCUGACUUUUCGa----- -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 42896 0.75 0.976805
Target:  5'- cGAACcUGgCCGACUUUUUGUGAAUa -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.