miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 10441 0.71 0.999174
Target:  5'- -uAACuUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 25974 0.71 0.999174
Target:  5'- -uAACuUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 132442 0.71 0.99898
Target:  5'- uUGAAC-UGUUauACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42588 0.71 0.99898
Target:  5'- uUGAACuUGUCCGACUUUUUaUAAGu- -3'
miRNA:   3'- -ACUUGcACAGGCUGAAAAGcAUUUga -5'
11699 3' -44.4 NC_003102.1 + 26712 0.71 0.998472
Target:  5'- cGAACGUGgCCGACUUUUUagauGGCg -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGcau-UUGa -5'
11699 3' -44.4 NC_003102.1 + 89348 0.71 0.998472
Target:  5'- uUGAACGcGUCCaACUUUUUGUcAAACa -3'
miRNA:   3'- -ACUUGCaCAGGcUGAAAAGCA-UUUGa -5'
11699 3' -44.4 NC_003102.1 + 26268 0.72 0.998147
Target:  5'- cGAACcUGgCCGACUUUUCGUGu--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 137238 0.72 0.998147
Target:  5'- cGAACGcGgCCGACUUUUcauagcCGUAGACUu -3'
miRNA:   3'- aCUUGCaCaGGCUGAAAA------GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 49897 0.72 0.998147
Target:  5'- cGAACGU--UCGACUgg-CGUAAGCUa -3'
miRNA:   3'- aCUUGCAcaGGCUGAaaaGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 137161 0.72 0.998147
Target:  5'- cGAACGcGgCCGACUUUUcauagcCGUAGACUu -3'
miRNA:   3'- aCUUGCaCaGGCUGAAAA------GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 23569 0.72 0.997766
Target:  5'- cGGACGUGUUgGACUUUUUGg----- -3'
miRNA:   3'- aCUUGCACAGgCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 26191 0.72 0.997766
Target:  5'- cGAACcUGgCCGACUUUUCGU--GCUu -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 121894 0.72 0.997321
Target:  5'- cGAACcUGgCCGACUUUUCGUAc--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 132335 0.72 0.996208
Target:  5'- uUGGACuugaaGUUgGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGca---CAGgCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132669 0.72 0.996208
Target:  5'- aUGAACcUGUUauACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 76478 0.73 0.995523
Target:  5'- cGAACcUGgCCGACUUUUCGUuGAUUg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 10746 0.73 0.995523
Target:  5'- uUGAACaUGUauGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132206 0.73 0.994741
Target:  5'- aUGAACuUGUUgGACUuacuUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgCUGA----AAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103479 0.73 0.994741
Target:  5'- cGAACcUGgCCGACUUUUCGUGcucaAACg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 132557 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.