miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 61602 0.68 0.999973
Target:  5'- cGAACcUGgcaGACUUUUCGUAAAUUu -3'
miRNA:   3'- aCUUGcACaggCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 55287 0.68 0.999973
Target:  5'- aUGAACaUGUUauACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132639 0.68 0.999963
Target:  5'- -uAACaUGUUgGACUUUUUGUAAACa -3'
miRNA:   3'- acUUGcACAGgCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 104635 0.68 0.999963
Target:  5'- cGAACcUGgCCGACUUUUUGUuGAUUg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 54757 0.68 0.99995
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 126 0.68 0.99995
Target:  5'- cGAACGcGaggCCGACgag-CGUGAGCUc -3'
miRNA:   3'- aCUUGCaCa--GGCUGaaaaGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 26108 0.68 0.99995
Target:  5'- cGAACcUGgCCGACUUUUUGUGcucaAACg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 97764 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97707 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97820 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132597 0.68 0.999933
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 89499 0.69 0.99992
Target:  5'- uUGGACGcGUucaaaucaaacccggCCGACUUUUCGUGguuaAACa -3'
miRNA:   3'- -ACUUGCaCA---------------GGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 89640 0.69 0.999882
Target:  5'- -aAACcUGUCUGACUUUUCGUGu--- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 10339 0.69 0.999845
Target:  5'- cGAACacGUCUGACUUgUCGUAAAa- -3'
miRNA:   3'- aCUUGcaCAGGCUGAAaAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 36210 0.7 0.999741
Target:  5'- cGAACcUGgCCGACUUUUUGUAAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 132092 0.7 0.999579
Target:  5'- -aAACuUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137057 0.7 0.999579
Target:  5'- uUGAACcUGUCgGACUUUUCaUAAAUa -3'
miRNA:   3'- -ACUUGcACAGgCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 61379 0.7 0.999579
Target:  5'- -aAACcUGgCCGACUUUUUGUAAACa -3'
miRNA:   3'- acUUGcACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 10683 0.7 0.999336
Target:  5'- -aAACuUGUCUGACUUUUCaUGAACUg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 26057 0.71 0.999174
Target:  5'- -uAACuUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.