miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 112652 0.9 0.40086
Target:  5'- cGAACcUGUCUGACUUUUCGUGAACa -3'
miRNA:   3'- aCUUGcACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67264 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67174 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 66980 0.88 0.521049
Target:  5'- -aAACGUGUCUGACUUUUCGUuAACUa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 104649 0.86 0.575237
Target:  5'- cGAACGUGUCaGACUUUUCGUGggUUg -3'
miRNA:   3'- aCUUGCACAGgCUGAAAAGCAUuuGA- -5'
11699 3' -44.4 NC_003102.1 + 97897 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 98011 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 97954 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 89506 0.86 0.619485
Target:  5'- uUGAACGUGgCUGACUUUUCGUAGAa- -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 121758 0.85 0.630599
Target:  5'- uUGAACGUGUuuGACUUUUCaUAAACg -3'
miRNA:   3'- -ACUUGCACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 76613 0.85 0.641714
Target:  5'- uUGAACGUGgCCGACUUUUCaUAAACUu -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 104770 0.85 0.641714
Target:  5'- uUGAACGUGgCCGACUUUUCaUAAACUu -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 54460 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 36346 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103730 0.84 0.718664
Target:  5'- -aAACGUGUCUGACUUUUCGcGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 112605 0.84 0.718664
Target:  5'- cGAACGUGUCCGACUUUUaGUuacgAAACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAgCA----UUUGa -5'
11699 3' -44.4 NC_003102.1 + 89574 0.83 0.7294
Target:  5'- uUGAACGUGUCUGACUUUUCauguuuUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGc-----AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42728 0.81 0.820149
Target:  5'- -cAACuUGUCUGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 61580 0.81 0.820149
Target:  5'- cGGACGUGUCCGAUcucugaacgUUUUCGUAGuCUg -3'
miRNA:   3'- aCUUGCACAGGCUG---------AAAAGCAUUuGA- -5'
11699 3' -44.4 NC_003102.1 + 26361 0.8 0.864047
Target:  5'- cGAACGUGgCCGACUUUUCGaGAAa- -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCaUUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.