miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 89438 1.09 0.039662
Target:  5'- uUGAACGUGUCCGACUUUUCGUAAACUu -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 10516 1.04 0.080181
Target:  5'- uUGAACGUGUCUGACUUUUCGUAGACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 56220 1.03 0.084958
Target:  5'- cUGAACGUGUCUGACUUUUCGUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 104483 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 112702 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26578 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 25914 0.99 0.149969
Target:  5'- cUGAACGUGUCUGACUUUUUGUAGACg -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103791 0.98 0.162974
Target:  5'- uUGAACGcGUCCGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 25834 0.97 0.186911
Target:  5'- cUGAACGUGgCCGACUUUUCGUAAACa -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97840 0.97 0.192056
Target:  5'- cGAACGUGgCCGACUUUUCGUGAACg -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26191 0.95 0.231641
Target:  5'- uUGAACGUGUCUGACUUUUCGUuAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 26132 0.95 0.231641
Target:  5'- uUGAACGUGUCUGACUUUUCGUuAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 56128 0.94 0.270851
Target:  5'- uUGAACGUGUCUGACUUUUCGUAAc-- -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 137448 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103673 0.93 0.292381
Target:  5'- uUGAACGUGUCUGACUUUUCGcGGACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137295 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137371 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 121680 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 10599 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 112786 0.92 0.323136
Target:  5'- cGAACGUGUCUGACUUUuuauagUCGUGGACUa -3'
miRNA:   3'- aCUUGCACAGGCUGAAA------AGCAUUUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.