miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 132844 0.8 0.87212
Target:  5'- aUGAACaUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 66980 0.88 0.521049
Target:  5'- -aAACGUGUCUGACUUUUCGUuAACUa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 89506 0.86 0.619485
Target:  5'- uUGAACGUGgCUGACUUUUCGUAGAa- -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 121758 0.85 0.630599
Target:  5'- uUGAACGUGUuuGACUUUUCaUAAACg -3'
miRNA:   3'- -ACUUGCACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54460 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 61580 0.81 0.820149
Target:  5'- cGGACGUGUCCGAUcucugaacgUUUUCGUAGuCUg -3'
miRNA:   3'- aCUUGCACAGGCUG---------AAAAGCAUUuGA- -5'
11699 3' -44.4 NC_003102.1 + 26361 0.8 0.864047
Target:  5'- cGAACGUGgCCGACUUUUCGaGAAa- -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCaUUUga -5'
11699 3' -44.4 NC_003102.1 + 132701 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132780 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67264 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67174 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 112652 0.9 0.40086
Target:  5'- cGAACcUGUCUGACUUUUCGUGAACa -3'
miRNA:   3'- aCUUGcACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 10516 1.04 0.080181
Target:  5'- uUGAACGUGUCUGACUUUUCGUAGACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26578 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 25914 0.99 0.149969
Target:  5'- cUGAACGUGUCUGACUUUUUGUAGACg -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 25834 0.97 0.186911
Target:  5'- cUGAACGUGgCCGACUUUUCGUAAACa -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26132 0.95 0.231641
Target:  5'- uUGAACGUGUCUGACUUUUCGUuAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 26191 0.95 0.231641
Target:  5'- uUGAACGUGUCUGACUUUUCGUuAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 10599 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 121680 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.