miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 67211 0.66 0.999998
Target:  5'- cGAACcUGgCCGACUUUUCGa----- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 121958 0.75 0.985698
Target:  5'- uUGAACGUGgCCGACUugUUUCGauuACUa -3'
miRNA:   3'- -ACUUGCACaGGCUGA--AAAGCauuUGA- -5'
11699 3' -44.4 NC_003102.1 + 61512 0.75 0.981653
Target:  5'- cGAACGUGUCUGACUUUcuuuaaGUcuACUa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAag----CAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 56220 1.03 0.084958
Target:  5'- cUGAACGUGUCUGACUUUUCGUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 61602 0.68 0.999973
Target:  5'- cGAACcUGgcaGACUUUUCGUAAAUUu -3'
miRNA:   3'- aCUUGcACaggCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 26108 0.68 0.99995
Target:  5'- cGAACcUGgCCGACUUUUUGUGcucaAACg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 89640 0.69 0.999882
Target:  5'- -aAACcUGUCUGACUUUUCGUGu--- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 42588 0.71 0.99898
Target:  5'- uUGAACuUGUCCGACUUUUUaUAAGu- -3'
miRNA:   3'- -ACUUGcACAGGCUGAAAAGcAUUUga -5'
11699 3' -44.4 NC_003102.1 + 23569 0.72 0.997766
Target:  5'- cGGACGUGUUgGACUUUUUGg----- -3'
miRNA:   3'- aCUUGCACAGgCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 25969 0.75 0.985698
Target:  5'- cGAACcUGgCCGACUUUUCGUGAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 121894 0.72 0.997321
Target:  5'- cGAACcUGgCCGACUUUUCGUAc--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 26268 0.72 0.998147
Target:  5'- cGAACcUGgCCGACUUUUCGUGu--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 121214 0.66 0.999998
Target:  5'- cGGGCuuuGUGUCCGAU--UUCGUGcccAACa -3'
miRNA:   3'- aCUUG---CACAGGCUGaaAAGCAU---UUGa -5'
11699 3' -44.4 NC_003102.1 + 10733 0.73 0.993852
Target:  5'- cGAACcUGgCCGACUUUUCGU--GCUg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 76486 0.67 0.999995
Target:  5'- uUGAACGcGUCUGACUUUcuaCGUuauuGCg -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAa--GCAuu--UGa -5'
11699 3' -44.4 NC_003102.1 + 26712 0.71 0.998472
Target:  5'- cGAACGUGgCCGACUUUUUagauGGCg -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGcau-UUGa -5'
11699 3' -44.4 NC_003102.1 + 67399 0.74 0.987446
Target:  5'- cGAACcUGgCCGACUUUUCGUAAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 137193 0.75 0.983771
Target:  5'- cGAACGUGgCCaACUUUUCGUGuACa -3'
miRNA:   3'- aCUUGCACaGGcUGAAAAGCAUuUGa -5'
11699 3' -44.4 NC_003102.1 + 121814 0.67 0.99999
Target:  5'- cGAACcUGgCCGACUUUUCGaUAAGu- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGC-AUUUga -5'
11699 3' -44.4 NC_003102.1 + 89499 0.69 0.99992
Target:  5'- uUGGACGcGUucaaaucaaacccggCCGACUUUUCGUGguuaAACa -3'
miRNA:   3'- -ACUUGCaCA---------------GGCUGAAAAGCAU----UUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.