miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 26191 0.72 0.997766
Target:  5'- cGAACcUGgCCGACUUUUCGU--GCUu -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 26268 0.72 0.998147
Target:  5'- cGAACcUGgCCGACUUUUCGUGu--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 26361 0.8 0.864047
Target:  5'- cGAACGUGgCCGACUUUUCGaGAAa- -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCaUUUga -5'
11699 3' -44.4 NC_003102.1 + 26578 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26712 0.71 0.998472
Target:  5'- cGAACGUGgCCGACUUUUUagauGGCg -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGcau-UUGa -5'
11699 3' -44.4 NC_003102.1 + 33335 0.68 0.99998
Target:  5'- gGAugGUGUCaaACUcagagUCGUGGACg -3'
miRNA:   3'- aCUugCACAGgcUGAaa---AGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 36096 0.74 0.989023
Target:  5'- cGAACcUGUCUGACUUUUUaUAAACUu -3'
miRNA:   3'- aCUUGcACAGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 36210 0.7 0.999741
Target:  5'- cGAACcUGgCCGACUUUUUGUAAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 36232 0.76 0.971076
Target:  5'- uUGAACGUGgCCGACUUUUCaUGuACa -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGcAUuUGa -5'
11699 3' -44.4 NC_003102.1 + 36346 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42588 0.71 0.99898
Target:  5'- uUGAACuUGUCCGACUUUUUaUAAGu- -3'
miRNA:   3'- -ACUUGcACAGGCUGAAAAGcAUUUga -5'
11699 3' -44.4 NC_003102.1 + 42728 0.81 0.820149
Target:  5'- -cAACuUGUCUGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42761 0.75 0.976805
Target:  5'- uUGAACGcGUCUGACUUUUCGa----- -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 42896 0.75 0.976805
Target:  5'- cGAACcUGgCCGACUUUUUGUGAAUa -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 49897 0.72 0.998147
Target:  5'- cGAACGU--UCGACUgg-CGUAAGCUa -3'
miRNA:   3'- aCUUGCAcaGGCUGAaaaGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 54450 0.79 0.901815
Target:  5'- uUGAACGUGUCCGACUUUUg------- -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgcauuuga -5'
11699 3' -44.4 NC_003102.1 + 54460 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54717 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54757 0.68 0.99995
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54797 0.75 0.981653
Target:  5'- aUGAACaUGUuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.