Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11699 | 5' | -47.3 | NC_003102.1 | + | 89476 | 1.07 | 0.021314 |
Target: 5'- uUGAGACACGAAAAGUCAGACAGGUUUa -3' miRNA: 3'- -ACUCUGUGCUUUUCAGUCUGUCCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 112816 | 0.84 | 0.437098 |
Target: 5'- aUGuu-CACGAAAAGUCAGACAGGUUc -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 103643 | 0.83 | 0.49767 |
Target: 5'- uUGAG-CACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUCuGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 137125 | 0.79 | 0.704873 |
Target: 5'- aGAGACauguccACGAAAAGUCAGACAcGUUUg -3' miRNA: 3'- aCUCUG------UGCUUUUCAGUCUGUcCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 25798 | 0.78 | 0.747572 |
Target: 5'- uUGAGuauugauCACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUCu------GUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 66948 | 0.78 | 0.768256 |
Target: 5'- uUGuGAUAUGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACuCUGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10490 | 0.77 | 0.778391 |
Target: 5'- ---aACACGAAAAGUCGGcCAGGUUUg -3' miRNA: 3'- acucUGUGCUUUUCAGUCuGUCCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 25885 | 0.77 | 0.778391 |
Target: 5'- uUGAu-CACGAAAAGUCGGcCAGGUUUg -3' miRNA: 3'- -ACUcuGUGCUUUUCAGUCuGUCCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26012 | 0.77 | 0.795261 |
Target: 5'- aGAGuuaaaguggcuuaaGCACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- aCUC--------------UGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10603 | 0.77 | 0.798188 |
Target: 5'- --cGAUACGAAAAGUCAGACAaGUUa -3' miRNA: 3'- acuCUGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10655 | 0.77 | 0.807828 |
Target: 5'- ---aGCACGAAAAGUCGGcCAGGUUa -3' miRNA: 3'- acucUGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10565 | 0.76 | 0.844418 |
Target: 5'- gUGAuucaGCACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUc---UGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26106 | 0.75 | 0.885026 |
Target: 5'- ---aACACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acucUGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 67148 | 0.73 | 0.930806 |
Target: 5'- aGAGuaguuaACGAAAAGUCAGACAcGUUUg -3' miRNA: 3'- aCUCug----UGCUUUUCAGUCUGUcCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26137 | 0.73 | 0.941382 |
Target: 5'- --cGACuACGAAAAGUCAGACAaGUUa -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 121646 | 0.73 | 0.941382 |
Target: 5'- cGAuGACuuauCGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- aCU-CUGu---GCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10408 | 0.73 | 0.941382 |
Target: 5'- uUGGccuCACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUcu-GUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26220 | 0.73 | 0.941382 |
Target: 5'- --cGACuACGAAAAGUCAGACAaGUUa -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 25944 | 0.73 | 0.946253 |
Target: 5'- uUGAGACA--AAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUCUGUgcUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 89323 | 0.72 | 0.955176 |
Target: 5'- ----cCACGAAAAGUCGGcCGGGUUUg -3' miRNA: 3'- acucuGUGCUUUUCAGUCuGUCCAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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