miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 5' -47.3 NC_003102.1 + 9570 0.7 0.982958
Target:  5'- uUGAGACACGuuucGAGUCGGGCGaucGUUg -3'
miRNA:   3'- -ACUCUGUGCuu--UUCAGUCUGUc--CAAa -5'
11699 5' -47.3 NC_003102.1 + 10408 0.73 0.941382
Target:  5'- uUGGccuCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUcu-GUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10490 0.77 0.778391
Target:  5'- ---aACACGAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 10565 0.76 0.844418
Target:  5'- gUGAuucaGCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUc---UGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10603 0.77 0.798188
Target:  5'- --cGAUACGAAAAGUCAGACAaGUUa -3'
miRNA:   3'- acuCUGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 10655 0.77 0.807828
Target:  5'- ---aGCACGAAAAGUCGGcCAGGUUa -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10677 0.66 0.999531
Target:  5'- ----cUACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 10762 0.72 0.966584
Target:  5'- --cGACuACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 10846 0.68 0.995928
Target:  5'- -cAGuuCAUGAAAAGUCAGACAaGUUUg -3'
miRNA:   3'- acUCu-GUGCUUUUCAGUCUGUcCAAA- -5'
11699 5' -47.3 NC_003102.1 + 25798 0.78 0.747572
Target:  5'- uUGAGuauugauCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUCu------GUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 25885 0.77 0.778391
Target:  5'- uUGAu-CACGAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- -ACUcuGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 25944 0.73 0.946253
Target:  5'- uUGAGACA--AAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUCUGUgcUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26012 0.77 0.795261
Target:  5'- aGAGuuaaaguggcuuaaGCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCUC--------------UGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26106 0.75 0.885026
Target:  5'- ---aACACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26137 0.73 0.941382
Target:  5'- --cGACuACGAAAAGUCAGACAaGUUa -3'
miRNA:   3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 26220 0.73 0.941382
Target:  5'- --cGACuACGAAAAGUCAGACAaGUUa -3'
miRNA:   3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 26302 0.66 0.999531
Target:  5'- --cGACauguuaACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acuCUG------UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 26738 0.69 0.994382
Target:  5'- ----cCACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 42565 0.72 0.966584
Target:  5'- aUGuu-CACGAAAAGUCAGACAaGUUg -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 55963 0.66 0.999412
Target:  5'- aUGu--UACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.