Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11699 | 5' | -47.3 | NC_003102.1 | + | 89412 | 0.68 | 0.995205 |
Target: 5'- ---aACAUGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acucUGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 76511 | 0.69 | 0.994382 |
Target: 5'- ----uUACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26738 | 0.69 | 0.994382 |
Target: 5'- ----cCACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 104323 | 0.69 | 0.994382 |
Target: 5'- ----cCACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 103507 | 0.69 | 0.992394 |
Target: 5'- cGuGucCGCGAAAAGUCAGACAcGUUc -3' miRNA: 3'- aCuCu-GUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 121732 | 0.69 | 0.989883 |
Target: 5'- -aAG-UACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acUCuGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 9570 | 0.7 | 0.982958 |
Target: 5'- uUGAGACACGuuucGAGUCGGGCGaucGUUg -3' miRNA: 3'- -ACUCUGUGCuu--UUCAGUCUGUc--CAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 103567 | 0.71 | 0.980769 |
Target: 5'- aUGuc-CGCGAAAAGUCAGACAcGUUUa -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUcCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 121843 | 0.71 | 0.97577 |
Target: 5'- --uGACuACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 112531 | 0.71 | 0.97577 |
Target: 5'- cGAGcucgcgucCACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- aCUCu-------GUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 137285 | 0.71 | 0.969883 |
Target: 5'- aUGuc-CACGAAAAGUCAGACAcGUUUg -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUcCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 137208 | 0.71 | 0.969883 |
Target: 5'- aUGuc-CACGAAAAGUCAGACAcGUUUg -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUcCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10762 | 0.72 | 0.966584 |
Target: 5'- --cGACuACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 42565 | 0.72 | 0.966584 |
Target: 5'- aUGuu-CACGAAAAGUCAGACAaGUUg -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 67228 | 0.72 | 0.963037 |
Target: 5'- cGAuGACuuauuACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- aCU-CUG-----UGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 89323 | 0.72 | 0.955176 |
Target: 5'- ----cCACGAAAAGUCGGcCGGGUUUg -3' miRNA: 3'- acucuGUGCUUUUCAGUCuGUCCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 25944 | 0.73 | 0.946253 |
Target: 5'- uUGAGACA--AAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUCUGUgcUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 121646 | 0.73 | 0.941382 |
Target: 5'- cGAuGACuuauCGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- aCU-CUGu---GCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10408 | 0.73 | 0.941382 |
Target: 5'- uUGGccuCACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- -ACUcu-GUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26137 | 0.73 | 0.941382 |
Target: 5'- --cGACuACGAAAAGUCAGACAaGUUa -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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