miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 129011 0.73 0.265998
Target:  5'- uACuGCuCCGUCGgCGCCgGCCGCCGCUa -3'
miRNA:   3'- -UGuUGuGGCGGCgGUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 52491 0.74 0.242503
Target:  5'- cACAugAUCGUgCGCCuaucggacGCgGCCACCGCCa -3'
miRNA:   3'- -UGUugUGGCG-GCGG--------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6708 0.75 0.226036
Target:  5'- gAUggUGCCGCUGCCGCCGguguuggCGCUGCCg -3'
miRNA:   3'- -UGuuGUGGCGGCGGUGGCg------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22648 0.75 0.226036
Target:  5'- uGCAACA-CGCCGCgACuCGCCggGCUGCCu -3'
miRNA:   3'- -UGUUGUgGCGGCGgUG-GCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 29580 0.75 0.220762
Target:  5'- gACAugAUCGCCGCCACauCGUCGgCGUCg -3'
miRNA:   3'- -UGUugUGGCGGCGGUG--GCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 89863 0.75 0.22024
Target:  5'- gACGACGcgaacgguuucuuCCGCCGCCGCCGCCAgacaggaUGUCa -3'
miRNA:   3'- -UGUUGU-------------GGCGGCGGUGGCGGUg------GCGG- -5'
11700 5' -61.6 NC_003102.1 + 15703 0.75 0.210527
Target:  5'- cGCGACGCCGacgagucgCGCgAUCGCCAUUGCCa -3'
miRNA:   3'- -UGUUGUGGCg-------GCGgUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 21074 0.75 0.200704
Target:  5'- cGCAACuuugacuauagACgGCCGUCcgaaauGCUGCCACCGCCg -3'
miRNA:   3'- -UGUUG-----------UGgCGGCGG------UGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 16646 0.75 0.197836
Target:  5'- uCAACGCUccucuuaaugGCCGCCgguuugaccuguuggACCGCCGCCGCg -3'
miRNA:   3'- uGUUGUGG----------CGGCGG---------------UGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 111573 0.75 0.195944
Target:  5'- gGCGGCGgCGUCaUCAUCGCCACCGCUa -3'
miRNA:   3'- -UGUUGUgGCGGcGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 87616 0.76 0.173598
Target:  5'- uGCAACuaagUCGgUGCCACCGCCGUCGCCg -3'
miRNA:   3'- -UGUUGu---GGCgGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 1828 0.76 0.173598
Target:  5'- cCGACACaaauuuuaCCGCCGCCGCCACCaCCu -3'
miRNA:   3'- uGUUGUGgc------GGCGGUGGCGGUGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 119503 0.77 0.158945
Target:  5'- uGCAACA-CGCaaucuugacuaagaaCGCCACCGgCGCCGCCg -3'
miRNA:   3'- -UGUUGUgGCG---------------GCGGUGGCgGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128945 0.77 0.153554
Target:  5'- --uGCGuCgGCCGCCGCCGCUAccCCGCCg -3'
miRNA:   3'- uguUGU-GgCGGCGGUGGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71476 0.78 0.13563
Target:  5'- aACGuCACCGCCGUUGCCGCCuCUGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92256 0.79 0.11667
Target:  5'- cCGACGCCGgCGCCGCCGUCACCu-- -3'
miRNA:   3'- uGUUGUGGCgGCGGUGGCGGUGGcgg -5'
11700 5' -61.6 NC_003102.1 + 49166 0.8 0.102788
Target:  5'- cCGAUGCCGCCGCCGCUGCUcaaACCGUUc -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 78614 0.8 0.097683
Target:  5'- uACAAUuuuuCCGUCGCCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUUGu---GGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72531 0.8 0.095222
Target:  5'- cACAugccggaAUCGuuGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUug-----UGGCggCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 18197 0.8 0.095222
Target:  5'- gGCGGCGCCGCCGUUuuggaaCGCgACCGCCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGug----GCGgUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.