Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11700 | 5' | -61.6 | NC_003102.1 | + | 41305 | 0.7 | 0.427899 |
Target: 5'- gACGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3' miRNA: 3'- -UGUUGUG------------GCGGCGGUGG----CGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 6836 | 0.7 | 0.427899 |
Target: 5'- aGCAACGCCaGCgGCaa-CGCCAaCGCCa -3' miRNA: 3'- -UGUUGUGG-CGgCGgugGCGGUgGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 32571 | 0.7 | 0.41094 |
Target: 5'- uCAAcCGuuGCCGCCcaGCCGCaGCCGUCu -3' miRNA: 3'- uGUU-GUggCGGCGG--UGGCGgUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 23528 | 0.7 | 0.402618 |
Target: 5'- cACGAgACCGUuggacgCGCCGCCuaCGcCCGCCa -3' miRNA: 3'- -UGUUgUGGCG------GCGGUGGcgGU-GGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 6617 | 0.7 | 0.402618 |
Target: 5'- -uGGCGCUGCCGagACUGCCGCUGgCg -3' miRNA: 3'- ugUUGUGGCGGCggUGGCGGUGGCgG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 37860 | 0.7 | 0.393589 |
Target: 5'- uCGACACaagaaaaacuuuuUGcCCGCCACCGUCAucUCGCCg -3' miRNA: 3'- uGUUGUG-------------GC-GGCGGUGGCGGU--GGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 62188 | 0.71 | 0.386299 |
Target: 5'- aGCGACggGCCGaaaCGCCgauugaaacACCcgaGCCGCCGCCu -3' miRNA: 3'- -UGUUG--UGGCg--GCGG---------UGG---CGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 115134 | 0.71 | 0.378305 |
Target: 5'- ---uCGCCGCCGUUGCCuuuggaCACCGCCg -3' miRNA: 3'- uguuGUGGCGGCGGUGGcg----GUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 128880 | 0.71 | 0.370423 |
Target: 5'- aACAACGCCGUCGCCGCUa-UACgCGCUc -3' miRNA: 3'- -UGUUGUGGCGGCGGUGGcgGUG-GCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 134959 | 0.71 | 0.354998 |
Target: 5'- cACGAUugCGaaCCGUCGCCGCUcaACaCGCCg -3' miRNA: 3'- -UGUUGugGC--GGCGGUGGCGG--UG-GCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 80717 | 0.71 | 0.347458 |
Target: 5'- cCGAuCGuuGCUGCCGCUGCUGCUGCUc -3' miRNA: 3'- uGUU-GUggCGGCGGUGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 66932 | 0.71 | 0.347458 |
Target: 5'- cACAAuCGUCGUCGUCGUCGUCGCCGCCg -3' miRNA: 3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 14956 | 0.72 | 0.335632 |
Target: 5'- uCGAaACCGCUGCCGCCGCUcgaagacuugguuucGuuGCCg -3' miRNA: 3'- uGUUgUGGCGGCGGUGGCGG---------------UggCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 3898 | 0.72 | 0.332722 |
Target: 5'- aGCAGCAgCaGCaGCCACCGCCGaugucuccuuCCGCUg -3' miRNA: 3'- -UGUUGUgG-CGgCGGUGGCGGU----------GGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 1765 | 0.72 | 0.311489 |
Target: 5'- cCGAUcauGCCuCCGCCACCaccaccaCCACCGCCg -3' miRNA: 3'- uGUUG---UGGcGGCGGUGGc------GGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 38745 | 0.73 | 0.297915 |
Target: 5'- cCGuCAUCGUCGUCGUCGUCGCCGCCg -3' miRNA: 3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 92972 | 0.73 | 0.287389 |
Target: 5'- -uGACGCCGCCGCCgauACCGUcuUugacgcgguuugaugACCGCCa -3' miRNA: 3'- ugUUGUGGCGGCGG---UGGCG--G---------------UGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 105339 | 0.73 | 0.284803 |
Target: 5'- uCGuCACCGUCGUCGCCGCuguuaucggCACCGCUc -3' miRNA: 3'- uGUuGUGGCGGCGGUGGCG---------GUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 133872 | 0.73 | 0.278421 |
Target: 5'- gACGACGCgGCCGagcugCAUCGCCuuGCCGUCg -3' miRNA: 3'- -UGUUGUGgCGGCg----GUGGCGG--UGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 56887 | 0.73 | 0.268446 |
Target: 5'- gAUGAUGCCGUCGCCuCCGCCuccaccauaguggucACCGUCa -3' miRNA: 3'- -UGUUGUGGCGGCGGuGGCGG---------------UGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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