miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 48790 0.66 0.625331
Target:  5'- ----aGCCGUCGCUACUGCUcUCGUCg -3'
miRNA:   3'- uguugUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 48840 0.91 0.016406
Target:  5'- gGCGuuuCGCCGCCGUCGCCGCCGCCGCg -3'
miRNA:   3'- -UGUu--GUGGCGGCGGUGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 49042 0.66 0.644106
Target:  5'- uGCGGCG-CGUauggcuaucucuuCGCCuCCGCCACUGUCu -3'
miRNA:   3'- -UGUUGUgGCG-------------GCGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 49166 0.8 0.102788
Target:  5'- cCGAUGCCGCCGCCGCUGCUcaaACCGUUc -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 51573 0.66 0.674647
Target:  5'- -gAugACCGUCacauguuuuuGUCGCCGCCGuuGUCg -3'
miRNA:   3'- ugUugUGGCGG----------CGGUGGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 52491 0.74 0.242503
Target:  5'- cACAugAUCGUgCGCCuaucggacGCgGCCACCGCCa -3'
miRNA:   3'- -UGUugUGGCG-GCGG--------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 56887 0.73 0.268446
Target:  5'- gAUGAUGCCGUCGCCuCCGCCuccaccauaguggucACCGUCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGuGGCGG---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 59348 0.83 0.06303
Target:  5'- cCGuuGCCGCCGUCGCCGUCGCCGCUc -3'
miRNA:   3'- uGUugUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 59953 0.66 0.645094
Target:  5'- uUAAUuuCCGCCGUCGCUGCcCACaCGUa -3'
miRNA:   3'- uGUUGu-GGCGGCGGUGGCG-GUG-GCGg -5'
11700 5' -61.6 NC_003102.1 + 60365 0.98 0.005197
Target:  5'- uGCAuCGCCGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 62188 0.71 0.386299
Target:  5'- aGCGACggGCCGaaaCGCCgauugaaacACCcgaGCCGCCGCCu -3'
miRNA:   3'- -UGUUG--UGGCg--GCGG---------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 65430 0.67 0.59574
Target:  5'- uACAAUcugucuAUCGCCGCCuccuCCGCUuCgGCCc -3'
miRNA:   3'- -UGUUG------UGGCGGCGGu---GGCGGuGgCGG- -5'
11700 5' -61.6 NC_003102.1 + 65649 0.66 0.674647
Target:  5'- uACGACAaaaugcaaaaCGCCGUCAa-GCgCAUCGCCa -3'
miRNA:   3'- -UGUUGUg---------GCGGCGGUggCG-GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 66932 0.71 0.347458
Target:  5'- cACAAuCGUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 67868 0.67 0.576126
Target:  5'- --uAC-CCGUCGCCAgCGCUguuACCGUCu -3'
miRNA:   3'- uguUGuGGCGGCGGUgGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71285 0.66 0.654964
Target:  5'- ---uUACCGCCGCUACCGaa--CGUCa -3'
miRNA:   3'- uguuGUGGCGGCGGUGGCggugGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71476 0.78 0.13563
Target:  5'- aACGuCACCGCCGUUGCCGCCuCUGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72176 0.68 0.518353
Target:  5'- cGCGACGCUgagaugucggGCCGCUucggcuacGCUGCCuCCGCUc -3'
miRNA:   3'- -UGUUGUGG----------CGGCGG--------UGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72293 0.66 0.664818
Target:  5'- -aAACACCGUgucgggcaCGUCGCUGCCGCC-Ca -3'
miRNA:   3'- ugUUGUGGCG--------GCGGUGGCGGUGGcGg -5'
11700 5' -61.6 NC_003102.1 + 72531 0.8 0.095222
Target:  5'- cACAugccggaAUCGuuGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUug-----UGGCggCGGUGGCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.