miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 22648 0.75 0.226036
Target:  5'- uGCAACA-CGCCGCgACuCGCCggGCUGCCu -3'
miRNA:   3'- -UGUUGUgGCGGCGgUG-GCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22687 0.69 0.445265
Target:  5'- -uGGCGCCGauGCCgACCGCUucgACCGCUc -3'
miRNA:   3'- ugUUGUGGCggCGG-UGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22942 0.68 0.507998
Target:  5'- uGCGuAUGCCGUacgaaagCGUCGCCGCCGCCGa- -3'
miRNA:   3'- -UGU-UGUGGCG-------GCGGUGGCGGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 23528 0.7 0.402618
Target:  5'- cACGAgACCGUuggacgCGCCGCCuaCGcCCGCCa -3'
miRNA:   3'- -UGUUgUGGCG------GCGGUGGcgGU-GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 29323 0.69 0.445265
Target:  5'- ----aACCGUCuCCuCCGCCAUCGCCu -3'
miRNA:   3'- uguugUGGCGGcGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 29509 0.69 0.463018
Target:  5'- gACGGCACa-CCGCCAUUGCgGCCGaCUu -3'
miRNA:   3'- -UGUUGUGgcGGCGGUGGCGgUGGC-GG- -5'
11700 5' -61.6 NC_003102.1 + 29580 0.75 0.220762
Target:  5'- gACAugAUCGCCGCCACauCGUCGgCGUCg -3'
miRNA:   3'- -UGUugUGGCGGCGGUG--GCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 32442 0.66 0.674647
Target:  5'- cGCGACcguuACCGUgguCGCgACCGUaGCCGUCa -3'
miRNA:   3'- -UGUUG----UGGCG---GCGgUGGCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 32571 0.7 0.41094
Target:  5'- uCAAcCGuuGCCGCCcaGCCGCaGCCGUCu -3'
miRNA:   3'- uGUU-GUggCGGCGG--UGGCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 33269 0.91 0.017304
Target:  5'- aACAACGCCGUgcaGUCGCCGCCGCCGCCg -3'
miRNA:   3'- -UGUUGUGGCGg--CGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 37711 0.98 0.004926
Target:  5'- uCAuCACCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 37860 0.7 0.393589
Target:  5'- uCGACACaagaaaaacuuuuUGcCCGCCACCGUCAucUCGCCg -3'
miRNA:   3'- uGUUGUG-------------GC-GGCGGUGGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 38745 0.73 0.297915
Target:  5'- cCGuCAUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 40147 0.66 0.674647
Target:  5'- cACAAgAUCGCCucGUCGCC-CCAucUCGCCg -3'
miRNA:   3'- -UGUUgUGGCGG--CGGUGGcGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 40652 0.67 0.615453
Target:  5'- -aGAUAUagaCGUUACCGCCGCCGCg -3'
miRNA:   3'- ugUUGUGgcgGCGGUGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 41305 0.7 0.427899
Target:  5'- gACGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3'
miRNA:   3'- -UGUUGUG------------GCGGCGGUGG----CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 42186 0.66 0.625331
Target:  5'- aACGuACGCUucaUCGCCuCCGCCGCCGUUc -3'
miRNA:   3'- -UGU-UGUGGc--GGCGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 44948 0.66 0.635213
Target:  5'- uCAAUcuuuCCGCCGUCACCGaUUACaCGCUc -3'
miRNA:   3'- uGUUGu---GGCGGCGGUGGC-GGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 45984 0.81 0.088184
Target:  5'- cACGAUACCaCCGCCGCCGCCAUCaacgacauuGCCg -3'
miRNA:   3'- -UGUUGUGGcGGCGGUGGCGGUGG---------CGG- -5'
11700 5' -61.6 NC_003102.1 + 46026 0.83 0.058295
Target:  5'- uCGACcguaGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- uGUUGugg-CGGCGGUGGCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.