Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11700 | 5' | -61.6 | NC_003102.1 | + | 107337 | 0.67 | 0.575149 |
Target: 5'- uCAGCAUCauGCCGCaauucagCACCGUCugCGCa -3' miRNA: 3'- uGUUGUGG--CGGCG-------GUGGCGGugGCGg -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 20363 | 0.67 | 0.615453 |
Target: 5'- uCAGUGCCuUCGCCauaGCCGUCACCGUCu -3' miRNA: 3'- uGUUGUGGcGGCGG---UGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 67868 | 0.67 | 0.576126 |
Target: 5'- --uAC-CCGUCGCCAgCGCUguuACCGUCu -3' miRNA: 3'- uguUGuGGCGGCGGUgGCGG---UGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 121140 | 0.67 | 0.576126 |
Target: 5'- cACGAUACCaauuucguGCCGgucgCGCCGUguCCGCCg -3' miRNA: 3'- -UGUUGUGG--------CGGCg---GUGGCGguGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 102879 | 0.67 | 0.576126 |
Target: 5'- gGCAcCGCCGUCGUCAUUGUCGaCGUCg -3' miRNA: 3'- -UGUuGUGGCGGCGGUGGCGGUgGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 14916 | 0.67 | 0.576126 |
Target: 5'- cGCuguCGUCGUCGUCACUGCUGCUGCUg -3' miRNA: 3'- -UGuu-GUGGCGGCGGUGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 65430 | 0.67 | 0.59574 |
Target: 5'- uACAAUcugucuAUCGCCGCCuccuCCGCUuCgGCCc -3' miRNA: 3'- -UGUUG------UGGCGGCGGu---GGCGGuGgCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 92187 | 0.68 | 0.527839 |
Target: 5'- cCGGCACCGUgGCCGguUCGUCGuuGUCg -3' miRNA: 3'- uGUUGUGGCGgCGGU--GGCGGUggCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 22942 | 0.68 | 0.507998 |
Target: 5'- uGCGuAUGCCGUacgaaagCGUCGCCGCCGCCGa- -3' miRNA: 3'- -UGU-UGUGGCG-------GCGGUGGCGGUGGCgg -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 19529 | 0.68 | 0.556661 |
Target: 5'- aACAcuGCACCguuaaacggggaGCCGUCA-UGCuCGCCGCCg -3' miRNA: 3'- -UGU--UGUGG------------CGGCGGUgGCG-GUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 128970 | 0.68 | 0.537389 |
Target: 5'- nCGGCAgCUGCCGCuuCugCGuCUACCGCUa -3' miRNA: 3'- uGUUGU-GGCGGCG--GugGC-GGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 72176 | 0.68 | 0.518353 |
Target: 5'- cGCGACGCUgagaugucggGCCGCUucggcuacGCUGCCuCCGCUc -3' miRNA: 3'- -UGUUGUGG----------CGGCGG--------UGGCGGuGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 8944 | 0.68 | 0.518353 |
Target: 5'- gGCuauuuACGCgGCaGCUACCaCCACUGCCa -3' miRNA: 3'- -UGu----UGUGgCGgCGGUGGcGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 29323 | 0.69 | 0.445265 |
Target: 5'- ----aACCGUCuCCuCCGCCAUCGCCu -3' miRNA: 3'- uguugUGGCGGcGGuGGCGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 118487 | 0.69 | 0.481135 |
Target: 5'- -gGGCGCCGUCGCa--CGCCAucCCGUCu -3' miRNA: 3'- ugUUGUGGCGGCGgugGCGGU--GGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 29509 | 0.69 | 0.463018 |
Target: 5'- gACGGCACa-CCGCCAUUGCgGCCGaCUu -3' miRNA: 3'- -UGUUGUGgcGGCGGUGGCGgUGGC-GG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 18304 | 0.69 | 0.472032 |
Target: 5'- cCGACGCCGaCGa-ACCuGCCGCCGUCg -3' miRNA: 3'- uGUUGUGGCgGCggUGG-CGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 22687 | 0.69 | 0.445265 |
Target: 5'- -uGGCGCCGauGCCgACCGCUucgACCGCUc -3' miRNA: 3'- ugUUGUGGCggCGG-UGGCGG---UGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 41305 | 0.7 | 0.427899 |
Target: 5'- gACGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3' miRNA: 3'- -UGUUGUG------------GCGGCGGUGG----CGGUGGCGG- -5' |
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11700 | 5' | -61.6 | NC_003102.1 | + | 23528 | 0.7 | 0.402618 |
Target: 5'- cACGAgACCGUuggacgCGCCGCCuaCGcCCGCCa -3' miRNA: 3'- -UGUUgUGGCG------GCGGUGGcgGU-GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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