miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 119503 0.77 0.158945
Target:  5'- uGCAACA-CGCaaucuugacuaagaaCGCCACCGgCGCCGCCg -3'
miRNA:   3'- -UGUUGUgGCG---------------GCGGUGGCgGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 87616 0.76 0.173598
Target:  5'- uGCAACuaagUCGgUGCCACCGCCGUCGCCg -3'
miRNA:   3'- -UGUUGu---GGCgGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 1828 0.76 0.173598
Target:  5'- cCGACACaaauuuuaCCGCCGCCGCCACCaCCu -3'
miRNA:   3'- uGUUGUGgc------GGCGGUGGCGGUGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 111573 0.75 0.195944
Target:  5'- gGCGGCGgCGUCaUCAUCGCCACCGCUa -3'
miRNA:   3'- -UGUUGUgGCGGcGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 16646 0.75 0.197836
Target:  5'- uCAACGCUccucuuaaugGCCGCCgguuugaccuguuggACCGCCGCCGCg -3'
miRNA:   3'- uGUUGUGG----------CGGCGG---------------UGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 21074 0.75 0.200704
Target:  5'- cGCAACuuugacuauagACgGCCGUCcgaaauGCUGCCACCGCCg -3'
miRNA:   3'- -UGUUG-----------UGgCGGCGG------UGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 15703 0.75 0.210527
Target:  5'- cGCGACGCCGacgagucgCGCgAUCGCCAUUGCCa -3'
miRNA:   3'- -UGUUGUGGCg-------GCGgUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 89863 0.75 0.22024
Target:  5'- gACGACGcgaacgguuucuuCCGCCGCCGCCGCCAgacaggaUGUCa -3'
miRNA:   3'- -UGUUGU-------------GGCGGCGGUGGCGGUg------GCGG- -5'
11700 5' -61.6 NC_003102.1 + 29580 0.75 0.220762
Target:  5'- gACAugAUCGCCGCCACauCGUCGgCGUCg -3'
miRNA:   3'- -UGUugUGGCGGCGGUG--GCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22648 0.75 0.226036
Target:  5'- uGCAACA-CGCCGCgACuCGCCggGCUGCCu -3'
miRNA:   3'- -UGUUGUgGCGGCGgUG-GCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6708 0.75 0.226036
Target:  5'- gAUggUGCCGCUGCCGCCGguguuggCGCUGCCg -3'
miRNA:   3'- -UGuuGUGGCGGCGGUGGCg------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 52491 0.74 0.242503
Target:  5'- cACAugAUCGUgCGCCuaucggacGCgGCCACCGCCa -3'
miRNA:   3'- -UGUugUGGCG-GCGG--------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 129011 0.73 0.265998
Target:  5'- uACuGCuCCGUCGgCGCCgGCCGCCGCUa -3'
miRNA:   3'- -UGuUGuGGCGGCgGUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 56887 0.73 0.268446
Target:  5'- gAUGAUGCCGUCGCCuCCGCCuccaccauaguggucACCGUCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGuGGCGG---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 133872 0.73 0.278421
Target:  5'- gACGACGCgGCCGagcugCAUCGCCuuGCCGUCg -3'
miRNA:   3'- -UGUUGUGgCGGCg----GUGGCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 105339 0.73 0.284803
Target:  5'- uCGuCACCGUCGUCGCCGCuguuaucggCACCGCUc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCG---------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92972 0.73 0.287389
Target:  5'- -uGACGCCGCCGCCgauACCGUcuUugacgcgguuugaugACCGCCa -3'
miRNA:   3'- ugUUGUGGCGGCGG---UGGCG--G---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 38745 0.73 0.297915
Target:  5'- cCGuCAUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 1765 0.72 0.311489
Target:  5'- cCGAUcauGCCuCCGCCACCaccaccaCCACCGCCg -3'
miRNA:   3'- uGUUG---UGGcGGCGGUGGc------GGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 3898 0.72 0.332722
Target:  5'- aGCAGCAgCaGCaGCCACCGCCGaugucuccuuCCGCUg -3'
miRNA:   3'- -UGUUGUgG-CGgCGGUGGCGGU----------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.