miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 101864 1.11 0.000607
Target:  5'- gACAACACCGCCGCCACCGCCACCGCCg -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 17904 1.06 0.001473
Target:  5'- cCGGCACCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 134538 0.99 0.004425
Target:  5'- uGCGAcCGCCGCCGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 37711 0.98 0.004926
Target:  5'- uCAuCACCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 60365 0.98 0.005197
Target:  5'- uGCAuCGCCGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 111421 0.92 0.015145
Target:  5'- gAUGACGCCGCCGCCGCCGCCuccuCCGCUu -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGCGGu---GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 48840 0.91 0.016406
Target:  5'- gGCGuuuCGCCGCCGUCGCCGCCGCCGCg -3'
miRNA:   3'- -UGUu--GUGGCGGCGGUGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 33269 0.91 0.017304
Target:  5'- aACAACGCCGUgcaGUCGCCGCCGCCGCCg -3'
miRNA:   3'- -UGUUGUGGCGg--CGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 115162 0.89 0.021984
Target:  5'- aACGcCACCaCCGCCACCGCCACCGCUg -3'
miRNA:   3'- -UGUuGUGGcGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 113184 0.87 0.030219
Target:  5'- gGCAAuuguCACUGCCGCCACCGCCgacaccaccACCGCCa -3'
miRNA:   3'- -UGUU----GUGGCGGCGGUGGCGG---------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 46026 0.83 0.058295
Target:  5'- uCGACcguaGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- uGUUGugg-CGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 59348 0.83 0.06303
Target:  5'- cCGuuGCCGCCGUCGCCGUCGCCGCUc -3'
miRNA:   3'- uGUugUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 45984 0.81 0.088184
Target:  5'- cACGAUACCaCCGCCGCCGCCAUCaacgacauuGCCg -3'
miRNA:   3'- -UGUUGUGGcGGCGGUGGCGGUGG---------CGG- -5'
11700 5' -61.6 NC_003102.1 + 72531 0.8 0.095222
Target:  5'- cACAugccggaAUCGuuGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUug-----UGGCggCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 18197 0.8 0.095222
Target:  5'- gGCGGCGCCGCCGUUuuggaaCGCgACCGCCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGug----GCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 78614 0.8 0.097683
Target:  5'- uACAAUuuuuCCGUCGCCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUUGu---GGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 49166 0.8 0.102788
Target:  5'- cCGAUGCCGCCGCCGCUGCUcaaACCGUUc -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92256 0.79 0.11667
Target:  5'- cCGACGCCGgCGCCGCCGUCACCu-- -3'
miRNA:   3'- uGUUGUGGCgGCGGUGGCGGUGGcgg -5'
11700 5' -61.6 NC_003102.1 + 71476 0.78 0.13563
Target:  5'- aACGuCACCGCCGUUGCCGCCuCUGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128945 0.77 0.153554
Target:  5'- --uGCGuCgGCCGCCGCCGCUAccCCGCCg -3'
miRNA:   3'- uguUGU-GgCGGCGGUGGCGGU--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.