miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 38745 0.73 0.297915
Target:  5'- cCGuCAUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 89863 0.75 0.22024
Target:  5'- gACGACGcgaacgguuucuuCCGCCGCCGCCGCCAgacaggaUGUCa -3'
miRNA:   3'- -UGUUGU-------------GGCGGCGGUGGCGGUg------GCGG- -5'
11700 5' -61.6 NC_003102.1 + 22648 0.75 0.226036
Target:  5'- uGCAACA-CGCCGCgACuCGCCggGCUGCCu -3'
miRNA:   3'- -UGUUGUgGCGGCGgUG-GCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6708 0.75 0.226036
Target:  5'- gAUggUGCCGCUGCCGCCGguguuggCGCUGCCg -3'
miRNA:   3'- -UGuuGUGGCGGCGGUGGCg------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 129011 0.73 0.265998
Target:  5'- uACuGCuCCGUCGgCGCCgGCCGCCGCUa -3'
miRNA:   3'- -UGuUGuGGCGGCgGUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 56887 0.73 0.268446
Target:  5'- gAUGAUGCCGUCGCCuCCGCCuccaccauaguggucACCGUCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGuGGCGG---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 133872 0.73 0.278421
Target:  5'- gACGACGCgGCCGagcugCAUCGCCuuGCCGUCg -3'
miRNA:   3'- -UGUUGUGgCGGCg----GUGGCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 105339 0.73 0.284803
Target:  5'- uCGuCACCGUCGUCGCCGCuguuaucggCACCGCUc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCG---------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92972 0.73 0.287389
Target:  5'- -uGACGCCGCCGCCgauACCGUcuUugacgcgguuugaugACCGCCa -3'
miRNA:   3'- ugUUGUGGCGGCGG---UGGCG--G---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 15703 0.75 0.210527
Target:  5'- cGCGACGCCGacgagucgCGCgAUCGCCAUUGCCa -3'
miRNA:   3'- -UGUUGUGGCg-------GCGgUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128945 0.77 0.153554
Target:  5'- --uGCGuCgGCCGCCGCCGCUAccCCGCCg -3'
miRNA:   3'- uguUGU-GgCGGCGGUGGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71476 0.78 0.13563
Target:  5'- aACGuCACCGCCGUUGCCGCCuCUGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 37711 0.98 0.004926
Target:  5'- uCAuCACCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 111421 0.92 0.015145
Target:  5'- gAUGACGCCGCCGCCGCCGCCuccuCCGCUu -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGCGGu---GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 48840 0.91 0.016406
Target:  5'- gGCGuuuCGCCGCCGUCGCCGCCGCCGCg -3'
miRNA:   3'- -UGUu--GUGGCGGCGGUGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 59348 0.83 0.06303
Target:  5'- cCGuuGCCGCCGUCGCCGUCGCCGCUc -3'
miRNA:   3'- uGUugUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 45984 0.81 0.088184
Target:  5'- cACGAUACCaCCGCCGCCGCCAUCaacgacauuGCCg -3'
miRNA:   3'- -UGUUGUGGcGGCGGUGGCGGUGG---------CGG- -5'
11700 5' -61.6 NC_003102.1 + 18197 0.8 0.095222
Target:  5'- gGCGGCGCCGCCGUUuuggaaCGCgACCGCCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGug----GCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72531 0.8 0.095222
Target:  5'- cACAugccggaAUCGuuGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUug-----UGGCggCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 49166 0.8 0.102788
Target:  5'- cCGAUGCCGCCGCCGCUGCUcaaACCGUUc -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGG---UGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.