miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 17880 0.66 0.664818
Target:  5'- ---nCGCCGCCGCCGCCuucuauucUCACCGa- -3'
miRNA:   3'- uguuGUGGCGGCGGUGGc-------GGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 6791 0.7 0.440013
Target:  5'- aGCAGCACCaaCGCCagcggcagucucggcAgCGCCAgCGCCa -3'
miRNA:   3'- -UGUUGUGGcgGCGG---------------UgGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6836 0.7 0.427899
Target:  5'- aGCAACGCCaGCgGCaa-CGCCAaCGCCa -3'
miRNA:   3'- -UGUUGUGG-CGgCGgugGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 17904 1.06 0.001473
Target:  5'- cCGGCACCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 81568 0.66 0.635213
Target:  5'- gGCGAgGCUGUCGUCgaagucgacGCgGUCGCCGUCg -3'
miRNA:   3'- -UGUUgUGGCGGCGG---------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 44948 0.66 0.635213
Target:  5'- uCAAUcuuuCCGCCGUCACCGaUUACaCGCUc -3'
miRNA:   3'- uGUUGu---GGCGGCGGUGGC-GGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 135251 0.66 0.635213
Target:  5'- cCAGcCACCGCCGUCGUCGCCcUCuCCa -3'
miRNA:   3'- uGUU-GUGGCGGCGGUGGCGGuGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 65430 0.67 0.59574
Target:  5'- uACAAUcugucuAUCGCCGCCuccuCCGCUuCgGCCc -3'
miRNA:   3'- -UGUUG------UGGCGGCGGu---GGCGGuGgCGG- -5'
11700 5' -61.6 NC_003102.1 + 121140 0.67 0.576126
Target:  5'- cACGAUACCaauuucguGCCGgucgCGCCGUguCCGCCg -3'
miRNA:   3'- -UGUUGUGG--------CGGCg---GUGGCGguGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22687 0.69 0.445265
Target:  5'- -uGGCGCCGauGCCgACCGCUucgACCGCUc -3'
miRNA:   3'- ugUUGUGGCggCGG-UGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92187 0.68 0.527839
Target:  5'- cCGGCACCGUgGCCGguUCGUCGuuGUCg -3'
miRNA:   3'- uGUUGUGGCGgCGGU--GGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 102879 0.67 0.576126
Target:  5'- gGCAcCGCCGUCGUCAUUGUCGaCGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71285 0.66 0.654964
Target:  5'- ---uUACCGCCGCUACCGaa--CGUCa -3'
miRNA:   3'- uguuGUGGCGGCGGUGGCggugGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22942 0.68 0.507998
Target:  5'- uGCGuAUGCCGUacgaaagCGUCGCCGCCGCCGa- -3'
miRNA:   3'- -UGU-UGUGGCG-------GCGGUGGCGGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 59953 0.66 0.645094
Target:  5'- uUAAUuuCCGCCGUCGCUGCcCACaCGUa -3'
miRNA:   3'- uGUUGu-GGCGGCGGUGGCG-GUG-GCGg -5'
11700 5' -61.6 NC_003102.1 + 14916 0.67 0.576126
Target:  5'- cGCuguCGUCGUCGUCACUGCUGCUGCUg -3'
miRNA:   3'- -UGuu-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 118487 0.69 0.481135
Target:  5'- -gGGCGCCGUCGCa--CGCCAucCCGUCu -3'
miRNA:   3'- ugUUGUGGCGGCGgugGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 77885 0.7 0.440013
Target:  5'- gGCAACGaaGCCGaCCugacgagaacguacaACuCGCUGCCGCCa -3'
miRNA:   3'- -UGUUGUggCGGC-GG---------------UG-GCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 99339 0.66 0.645094
Target:  5'- uCAACACCGCCGCgguuuccaaGCCucaGUCAUCGUUu -3'
miRNA:   3'- uGUUGUGGCGGCGg--------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 119243 0.66 0.635213
Target:  5'- gGCAuGCACCaacaGCaCGCCACCGCgaucacgacgacUAUCGCUa -3'
miRNA:   3'- -UGU-UGUGG----CG-GCGGUGGCG------------GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.