miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 115134 0.71 0.378305
Target:  5'- ---uCGCCGCCGUUGCCuuuggaCACCGCCg -3'
miRNA:   3'- uguuGUGGCGGCGGUGGcg----GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6836 0.7 0.427899
Target:  5'- aGCAACGCCaGCgGCaa-CGCCAaCGCCa -3'
miRNA:   3'- -UGUUGUGG-CGgCGgugGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 102879 0.67 0.576126
Target:  5'- gGCAcCGCCGUCGUCAUUGUCGaCGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 99339 0.66 0.645094
Target:  5'- uCAACACCGCCGCgguuuccaaGCCucaGUCAUCGUUu -3'
miRNA:   3'- uGUUGUGGCGGCGg--------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 111573 0.75 0.195944
Target:  5'- gGCGGCGgCGUCaUCAUCGCCACCGCUa -3'
miRNA:   3'- -UGUUGUgGCGGcGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 14956 0.72 0.335632
Target:  5'- uCGAaACCGCUGCCGCCGCUcgaagacuugguuucGuuGCCg -3'
miRNA:   3'- uGUUgUGGCGGCGGUGGCGG---------------UggCGG- -5'
11700 5' -61.6 NC_003102.1 + 6791 0.7 0.440013
Target:  5'- aGCAGCACCaaCGCCagcggcagucucggcAgCGCCAgCGCCa -3'
miRNA:   3'- -UGUUGUGGcgGCGG---------------UgGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 59953 0.66 0.645094
Target:  5'- uUAAUuuCCGCCGUCGCUGCcCACaCGUa -3'
miRNA:   3'- uGUUGu-GGCGGCGGUGGCG-GUG-GCGg -5'
11700 5' -61.6 NC_003102.1 + 66932 0.71 0.347458
Target:  5'- cACAAuCGUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71285 0.66 0.654964
Target:  5'- ---uUACCGCCGCUACCGaa--CGUCa -3'
miRNA:   3'- uguuGUGGCGGCGGUGGCggugGCGG- -5'
11700 5' -61.6 NC_003102.1 + 77885 0.7 0.440013
Target:  5'- gGCAACGaaGCCGaCCugacgagaacguacaACuCGCUGCCGCCa -3'
miRNA:   3'- -UGUUGUggCGGC-GG---------------UG-GCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128880 0.71 0.370423
Target:  5'- aACAACGCCGUCGCCGCUa-UACgCGCUc -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGcgGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 22942 0.68 0.507998
Target:  5'- uGCGuAUGCCGUacgaaagCGUCGCCGCCGCCGa- -3'
miRNA:   3'- -UGU-UGUGGCG-------GCGGUGGCGGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 121140 0.67 0.576126
Target:  5'- cACGAUACCaauuucguGCCGgucgCGCCGUguCCGCCg -3'
miRNA:   3'- -UGUUGUGG--------CGGCg---GUGGCGguGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 135251 0.66 0.635213
Target:  5'- cCAGcCACCGCCGUCGUCGCCcUCuCCa -3'
miRNA:   3'- uGUU-GUGGCGGCGGUGGCGGuGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 81568 0.66 0.635213
Target:  5'- gGCGAgGCUGUCGUCgaagucgacGCgGUCGCCGUCg -3'
miRNA:   3'- -UGUUgUGGCGGCGG---------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92256 0.79 0.11667
Target:  5'- cCGACGCCGgCGCCGCCGUCACCu-- -3'
miRNA:   3'- uGUUGUGGCgGCGGUGGCGGUGGcgg -5'
11700 5' -61.6 NC_003102.1 + 1828 0.76 0.173598
Target:  5'- cCGACACaaauuuuaCCGCCGCCGCCACCaCCu -3'
miRNA:   3'- uGUUGUGgc------GGCGGUGGCGGUGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 29580 0.75 0.220762
Target:  5'- gACAugAUCGCCGCCACauCGUCGgCGUCg -3'
miRNA:   3'- -UGUugUGGCGGCGGUG--GCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 3898 0.72 0.332722
Target:  5'- aGCAGCAgCaGCaGCCACCGCCGaugucuccuuCCGCUg -3'
miRNA:   3'- -UGUUGUgG-CGgCGGUGGCGGU----------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.