miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 1765 0.72 0.311489
Target:  5'- cCGAUcauGCCuCCGCCACCaccaccaCCACCGCCg -3'
miRNA:   3'- uGUUG---UGGcGGCGGUGGc------GGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 1828 0.76 0.173598
Target:  5'- cCGACACaaauuuuaCCGCCGCCGCCACCaCCu -3'
miRNA:   3'- uGUUGUGgc------GGCGGUGGCGGUGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 3742 0.66 0.625331
Target:  5'- -gGugGCUGCUGCUGCUGCUGuuGCUc -3'
miRNA:   3'- ugUugUGGCGGCGGUGGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 3898 0.72 0.332722
Target:  5'- aGCAGCAgCaGCaGCCACCGCCGaugucuccuuCCGCUg -3'
miRNA:   3'- -UGUUGUgG-CGgCGGUGGCGGU----------GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6617 0.7 0.402618
Target:  5'- -uGGCGCUGCCGagACUGCCGCUGgCg -3'
miRNA:   3'- ugUUGUGGCGGCggUGGCGGUGGCgG- -5'
11700 5' -61.6 NC_003102.1 + 6708 0.75 0.226036
Target:  5'- gAUggUGCCGCUGCCGCCGguguuggCGCUGCCg -3'
miRNA:   3'- -UGuuGUGGCGGCGGUGGCg------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6791 0.7 0.440013
Target:  5'- aGCAGCACCaaCGCCagcggcagucucggcAgCGCCAgCGCCa -3'
miRNA:   3'- -UGUUGUGGcgGCGG---------------UgGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6836 0.7 0.427899
Target:  5'- aGCAACGCCaGCgGCaa-CGCCAaCGCCa -3'
miRNA:   3'- -UGUUGUGG-CGgCGgugGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 8944 0.68 0.518353
Target:  5'- gGCuauuuACGCgGCaGCUACCaCCACUGCCa -3'
miRNA:   3'- -UGu----UGUGgCGgCGGUGGcGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 14916 0.67 0.576126
Target:  5'- cGCuguCGUCGUCGUCACUGCUGCUGCUg -3'
miRNA:   3'- -UGuu-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 14956 0.72 0.335632
Target:  5'- uCGAaACCGCUGCCGCCGCUcgaagacuugguuucGuuGCCg -3'
miRNA:   3'- uGUUgUGGCGGCGGUGGCGG---------------UggCGG- -5'
11700 5' -61.6 NC_003102.1 + 15703 0.75 0.210527
Target:  5'- cGCGACGCCGacgagucgCGCgAUCGCCAUUGCCa -3'
miRNA:   3'- -UGUUGUGGCg-------GCGgUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 16646 0.75 0.197836
Target:  5'- uCAACGCUccucuuaaugGCCGCCgguuugaccuguuggACCGCCGCCGCg -3'
miRNA:   3'- uGUUGUGG----------CGGCGG---------------UGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 17880 0.66 0.664818
Target:  5'- ---nCGCCGCCGCCGCCuucuauucUCACCGa- -3'
miRNA:   3'- uguuGUGGCGGCGGUGGc-------GGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 17904 1.06 0.001473
Target:  5'- cCGGCACCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uGUUGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 18197 0.8 0.095222
Target:  5'- gGCGGCGCCGCCGUUuuggaaCGCgACCGCCa -3'
miRNA:   3'- -UGUUGUGGCGGCGGug----GCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 18304 0.69 0.472032
Target:  5'- cCGACGCCGaCGa-ACCuGCCGCCGUCg -3'
miRNA:   3'- uGUUGUGGCgGCggUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 19529 0.68 0.556661
Target:  5'- aACAcuGCACCguuaaacggggaGCCGUCA-UGCuCGCCGCCg -3'
miRNA:   3'- -UGU--UGUGG------------CGGCGGUgGCG-GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 20363 0.67 0.615453
Target:  5'- uCAGUGCCuUCGCCauaGCCGUCACCGUCu -3'
miRNA:   3'- uGUUGUGGcGGCGG---UGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 21074 0.75 0.200704
Target:  5'- cGCAACuuugacuauagACgGCCGUCcgaaauGCUGCCACCGCCg -3'
miRNA:   3'- -UGUUG-----------UGgCGGCGG------UGGCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.