miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 135251 0.66 0.635213
Target:  5'- cCAGcCACCGCCGUCGUCGCCcUCuCCa -3'
miRNA:   3'- uGUU-GUGGCGGCGGUGGCGGuGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 134959 0.71 0.354998
Target:  5'- cACGAUugCGaaCCGUCGCCGCUcaACaCGCCg -3'
miRNA:   3'- -UGUUGugGC--GGCGGUGGCGG--UG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 134538 0.99 0.004425
Target:  5'- uGCGAcCGCCGCCGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 133872 0.73 0.278421
Target:  5'- gACGACGCgGCCGagcugCAUCGCCuuGCCGUCg -3'
miRNA:   3'- -UGUUGUGgCGGCg----GUGGCGG--UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 133734 0.67 0.59574
Target:  5'- uCGGgGCCGCgucgcaGCCGCCGUaguguCGCCGCa -3'
miRNA:   3'- uGUUgUGGCGg-----CGGUGGCG-----GUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 129011 0.73 0.265998
Target:  5'- uACuGCuCCGUCGgCGCCgGCCGCCGCUa -3'
miRNA:   3'- -UGuUGuGGCGGCgGUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128970 0.68 0.537389
Target:  5'- nCGGCAgCUGCCGCuuCugCGuCUACCGCUa -3'
miRNA:   3'- uGUUGU-GGCGGCG--GugGC-GGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128945 0.77 0.153554
Target:  5'- --uGCGuCgGCCGCCGCCGCUAccCCGCCg -3'
miRNA:   3'- uguUGU-GgCGGCGGUGGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 128880 0.71 0.370423
Target:  5'- aACAACGCCGUCGCCGCUa-UACgCGCUc -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGcgGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 121140 0.67 0.576126
Target:  5'- cACGAUACCaauuucguGCCGgucgCGCCGUguCCGCCg -3'
miRNA:   3'- -UGUUGUGG--------CGGCg---GUGGCGguGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 119503 0.77 0.158945
Target:  5'- uGCAACA-CGCaaucuugacuaagaaCGCCACCGgCGCCGCCg -3'
miRNA:   3'- -UGUUGUgGCG---------------GCGGUGGCgGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 119243 0.66 0.635213
Target:  5'- gGCAuGCACCaacaGCaCGCCACCGCgaucacgacgacUAUCGCUa -3'
miRNA:   3'- -UGU-UGUGG----CG-GCGGUGGCG------------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 118487 0.69 0.481135
Target:  5'- -gGGCGCCGUCGCa--CGCCAucCCGUCu -3'
miRNA:   3'- ugUUGUGGCGGCGgugGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 115162 0.89 0.021984
Target:  5'- aACGcCACCaCCGCCACCGCCACCGCUg -3'
miRNA:   3'- -UGUuGUGGcGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 115134 0.71 0.378305
Target:  5'- ---uCGCCGCCGUUGCCuuuggaCACCGCCg -3'
miRNA:   3'- uguuGUGGCGGCGGUGGcg----GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 113184 0.87 0.030219
Target:  5'- gGCAAuuguCACUGCCGCCACCGCCgacaccaccACCGCCa -3'
miRNA:   3'- -UGUU----GUGGCGGCGGUGGCGG---------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 111573 0.75 0.195944
Target:  5'- gGCGGCGgCGUCaUCAUCGCCACCGCUa -3'
miRNA:   3'- -UGUUGUgGCGGcGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 111421 0.92 0.015145
Target:  5'- gAUGACGCCGCCGCCGCCGCCuccuCCGCUu -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGCGGu---GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 107337 0.67 0.575149
Target:  5'- uCAGCAUCauGCCGCaauucagCACCGUCugCGCa -3'
miRNA:   3'- uGUUGUGG--CGGCG-------GUGGCGGugGCGg -5'
11700 5' -61.6 NC_003102.1 + 105339 0.73 0.284803
Target:  5'- uCGuCACCGUCGUCGCCGCuguuaucggCACCGCUc -3'
miRNA:   3'- uGUuGUGGCGGCGGUGGCG---------GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.