miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 102879 0.67 0.576126
Target:  5'- gGCAcCGCCGUCGUCAUUGUCGaCGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 101864 1.11 0.000607
Target:  5'- gACAACACCGCCGCCACCGCCACCGCCg -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 99339 0.66 0.645094
Target:  5'- uCAACACCGCCGCgguuuccaaGCCucaGUCAUCGUUu -3'
miRNA:   3'- uGUUGUGGCGGCGg--------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 95809 0.67 0.585917
Target:  5'- uACAACGCCGgauugaucagaCCGCguCUGCUACcCGCa -3'
miRNA:   3'- -UGUUGUGGC-----------GGCGguGGCGGUG-GCGg -5'
11700 5' -61.6 NC_003102.1 + 92972 0.73 0.287389
Target:  5'- -uGACGCCGCCGCCgauACCGUcuUugacgcgguuugaugACCGCCa -3'
miRNA:   3'- ugUUGUGGCGGCGG---UGGCG--G---------------UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 92256 0.79 0.11667
Target:  5'- cCGACGCCGgCGCCGCCGUCACCu-- -3'
miRNA:   3'- uGUUGUGGCgGCGGUGGCGGUGGcgg -5'
11700 5' -61.6 NC_003102.1 + 92187 0.68 0.527839
Target:  5'- cCGGCACCGUgGCCGguUCGUCGuuGUCg -3'
miRNA:   3'- uGUUGUGGCGgCGGU--GGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 89863 0.75 0.22024
Target:  5'- gACGACGcgaacgguuucuuCCGCCGCCGCCGCCAgacaggaUGUCa -3'
miRNA:   3'- -UGUUGU-------------GGCGGCGGUGGCGGUg------GCGG- -5'
11700 5' -61.6 NC_003102.1 + 87616 0.76 0.173598
Target:  5'- uGCAACuaagUCGgUGCCACCGCCGUCGCCg -3'
miRNA:   3'- -UGUUGu---GGCgGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 81568 0.66 0.635213
Target:  5'- gGCGAgGCUGUCGUCgaagucgacGCgGUCGCCGUCg -3'
miRNA:   3'- -UGUUgUGGCGGCGG---------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 80717 0.71 0.347458
Target:  5'- cCGAuCGuuGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- uGUU-GUggCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 78614 0.8 0.097683
Target:  5'- uACAAUuuuuCCGUCGCCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUUGu---GGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 77885 0.7 0.440013
Target:  5'- gGCAACGaaGCCGaCCugacgagaacguacaACuCGCUGCCGCCa -3'
miRNA:   3'- -UGUUGUggCGGC-GG---------------UG-GCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72531 0.8 0.095222
Target:  5'- cACAugccggaAUCGuuGCCGCCGCCGCCGCUa -3'
miRNA:   3'- -UGUug-----UGGCggCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72293 0.66 0.664818
Target:  5'- -aAACACCGUgucgggcaCGUCGCUGCCGCC-Ca -3'
miRNA:   3'- ugUUGUGGCG--------GCGGUGGCGGUGGcGg -5'
11700 5' -61.6 NC_003102.1 + 72176 0.68 0.518353
Target:  5'- cGCGACGCUgagaugucggGCCGCUucggcuacGCUGCCuCCGCUc -3'
miRNA:   3'- -UGUUGUGG----------CGGCGG--------UGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71476 0.78 0.13563
Target:  5'- aACGuCACCGCCGUUGCCGCCuCUGUCg -3'
miRNA:   3'- -UGUuGUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 71285 0.66 0.654964
Target:  5'- ---uUACCGCCGCUACCGaa--CGUCa -3'
miRNA:   3'- uguuGUGGCGGCGGUGGCggugGCGG- -5'
11700 5' -61.6 NC_003102.1 + 67868 0.67 0.576126
Target:  5'- --uAC-CCGUCGCCAgCGCUguuACCGUCu -3'
miRNA:   3'- uguUGuGGCGGCGGUgGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 66932 0.71 0.347458
Target:  5'- cACAAuCGUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.