miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 14956 0.72 0.335632
Target:  5'- uCGAaACCGCUGCCGCCGCUcgaagacuugguuucGuuGCCg -3'
miRNA:   3'- uGUUgUGGCGGCGGUGGCGG---------------UggCGG- -5'
11700 5' -61.6 NC_003102.1 + 80717 0.71 0.347458
Target:  5'- cCGAuCGuuGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- uGUU-GUggCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 66932 0.71 0.347458
Target:  5'- cACAAuCGUCGUCGUCGUCGUCGCCGCCg -3'
miRNA:   3'- -UGUU-GUGGCGGCGGUGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 134959 0.71 0.354998
Target:  5'- cACGAUugCGaaCCGUCGCCGCUcaACaCGCCg -3'
miRNA:   3'- -UGUUGugGC--GGCGGUGGCGG--UG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 128880 0.71 0.370423
Target:  5'- aACAACGCCGUCGCCGCUa-UACgCGCUc -3'
miRNA:   3'- -UGUUGUGGCGGCGGUGGcgGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 115134 0.71 0.378305
Target:  5'- ---uCGCCGCCGUUGCCuuuggaCACCGCCg -3'
miRNA:   3'- uguuGUGGCGGCGGUGGcg----GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 62188 0.71 0.386299
Target:  5'- aGCGACggGCCGaaaCGCCgauugaaacACCcgaGCCGCCGCCu -3'
miRNA:   3'- -UGUUG--UGGCg--GCGG---------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 37860 0.7 0.393589
Target:  5'- uCGACACaagaaaaacuuuuUGcCCGCCACCGUCAucUCGCCg -3'
miRNA:   3'- uGUUGUG-------------GC-GGCGGUGGCGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6617 0.7 0.402618
Target:  5'- -uGGCGCUGCCGagACUGCCGCUGgCg -3'
miRNA:   3'- ugUUGUGGCGGCggUGGCGGUGGCgG- -5'
11700 5' -61.6 NC_003102.1 + 23528 0.7 0.402618
Target:  5'- cACGAgACCGUuggacgCGCCGCCuaCGcCCGCCa -3'
miRNA:   3'- -UGUUgUGGCG------GCGGUGGcgGU-GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 32571 0.7 0.41094
Target:  5'- uCAAcCGuuGCCGCCcaGCCGCaGCCGUCu -3'
miRNA:   3'- uGUU-GUggCGGCGG--UGGCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6836 0.7 0.427899
Target:  5'- aGCAACGCCaGCgGCaa-CGCCAaCGCCa -3'
miRNA:   3'- -UGUUGUGG-CGgCGgugGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 41305 0.7 0.427899
Target:  5'- gACGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3'
miRNA:   3'- -UGUUGUG------------GCGGCGGUGG----CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 77885 0.7 0.440013
Target:  5'- gGCAACGaaGCCGaCCugacgagaacguacaACuCGCUGCCGCCa -3'
miRNA:   3'- -UGUUGUggCGGC-GG---------------UG-GCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 6791 0.7 0.440013
Target:  5'- aGCAGCACCaaCGCCagcggcagucucggcAgCGCCAgCGCCa -3'
miRNA:   3'- -UGUUGUGGcgGCGG---------------UgGCGGUgGCGG- -5'
11700 5' -61.6 NC_003102.1 + 22687 0.69 0.445265
Target:  5'- -uGGCGCCGauGCCgACCGCUucgACCGCUc -3'
miRNA:   3'- ugUUGUGGCggCGG-UGGCGG---UGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 29323 0.69 0.445265
Target:  5'- ----aACCGUCuCCuCCGCCAUCGCCu -3'
miRNA:   3'- uguugUGGCGGcGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 29509 0.69 0.463018
Target:  5'- gACGGCACa-CCGCCAUUGCgGCCGaCUu -3'
miRNA:   3'- -UGUUGUGgcGGCGGUGGCGgUGGC-GG- -5'
11700 5' -61.6 NC_003102.1 + 18304 0.69 0.472032
Target:  5'- cCGACGCCGaCGa-ACCuGCCGCCGUCg -3'
miRNA:   3'- uGUUGUGGCgGCggUGG-CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 118487 0.69 0.481135
Target:  5'- -gGGCGCCGUCGCa--CGCCAucCCGUCu -3'
miRNA:   3'- ugUUGUGGCGGCGgugGCGGU--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.