miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 26717 0.83 0.382179
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 103533 0.83 0.373452
Target:  5'- cAAAUCaAACCUGGCCGACUUUUUGa- -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 112650 0.83 0.373452
Target:  5'- --uUCGAACCUGuCUGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCUUGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 54794 0.85 0.308619
Target:  5'- uAAUCGAACCUGGCUGACUUUUUa-- -3'
miRNA:   3'- uUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 137198 0.85 0.293815
Target:  5'- cAAAUCGAACgUGGCCaACUUUUCGUGu -3'
miRNA:   3'- -UUUAGCUUGgACCGGcUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26332 0.85 0.293815
Target:  5'- cAAAUCGAAUUUGGCCGACUUUUUGg- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 25830 0.85 0.293815
Target:  5'- cGAUCuGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAG-CUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112469 0.86 0.265879
Target:  5'- --uUCGAACCUGGCUGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 89488 0.86 0.252737
Target:  5'- cAAAUCaAACCcGGCCGACUUUUCGUGg -3'
miRNA:   3'- -UUUAGcUUGGaCCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 61373 0.87 0.228059
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 103651 0.88 0.20011
Target:  5'- cAAAUCGAACCUGGCCGACUcUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAaAAGcac -5'
11701 3' -49.2 NC_003102.1 + 54600 0.9 0.161598
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUu-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 61607 0.91 0.137233
Target:  5'- cGAAUCGAACCUGGCaGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGgCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 26356 0.91 0.133516
Target:  5'- cGAAUCGAACgUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 56079 0.91 0.133516
Target:  5'- cAGAUCGAACCUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 104344 0.92 0.122913
Target:  5'- cGAAUCGAACCUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 97901 0.93 0.109991
Target:  5'- uGAUCGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 97958 0.93 0.109991
Target:  5'- uGAUCGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 98015 0.93 0.109991
Target:  5'- uGAUCGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10656 0.94 0.090393
Target:  5'- cAAAUCaAACCUGGCCGACUUUUCGUGu -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.