miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 104279 0.71 0.936383
Target:  5'- --uUUGAuuuuaACCUGGuuGACUUUUCGa- -3'
miRNA:   3'- uuuAGCU-----UGGACCggCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 89646 0.72 0.919627
Target:  5'- cAAAUUaAACCUGuCUGACUUUUCGUGu -3'
miRNA:   3'- -UUUAGcUUGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 23423 0.72 0.907111
Target:  5'- cAAUCGcccGGCCUGGCCGACUguuaCGg- -3'
miRNA:   3'- uUUAGC---UUGGACCGGCUGAaaa-GCac -5'
11701 3' -49.2 NC_003102.1 + 26498 0.73 0.871244
Target:  5'- --uUCGAACCUGGCUaACUUUUCc-- -3'
miRNA:   3'- uuuAGCUUGGACCGGcUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 121959 0.74 0.838174
Target:  5'- --uUUGAACgUGGCCGACUugUUUCGa- -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGA--AAAGCac -5'
11701 3' -49.2 NC_003102.1 + 26576 0.75 0.801731
Target:  5'- --uUCGAACgUGuCUGACUUUUCGUGg -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 104485 0.75 0.801731
Target:  5'- --uUCGAACgUGuCUGACUUUUCGUGg -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 89434 0.75 0.792162
Target:  5'- cAAAUUGAACgUGuCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10594 0.76 0.762521
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 121675 0.76 0.762521
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 54309 0.77 0.700012
Target:  5'- cAAAUC-AACUUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 137233 0.77 0.689305
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUG-GaCCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 137156 0.77 0.689305
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUG-GaCCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 76614 0.77 0.667739
Target:  5'- --uUUGAACgUGGCCGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 104771 0.77 0.667739
Target:  5'- --uUUGAACgUGGCCGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 112762 0.78 0.656902
Target:  5'- cAAUUGAACCUGGCa-ACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGGACCGgcUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 89505 0.8 0.517329
Target:  5'- --uUUGAACgUGGCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112707 0.8 0.506978
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUGg -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 42591 0.82 0.409162
Target:  5'- uAAUCGAACCUGGCCGACcgcaaacUUGUGa -3'
miRNA:   3'- uUUAGCUUGGACCGGCUGaaa----AGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26717 0.83 0.382179
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.