miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 36205 0.98 0.049651
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 36236 0.83 0.382179
Target:  5'- cGAAUUGAACgUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 42591 0.82 0.409162
Target:  5'- uAAUCGAACCUGGCCGACcgcaaacUUGUGa -3'
miRNA:   3'- uUUAGCUUGGACCGGCUGaaa----AGCAC- -5'
11701 3' -49.2 NC_003102.1 + 42592 0.68 0.986324
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUauaaGUGu -3'
miRNA:   3'- -UUUAGCUUGGACcGGCUGAAAAG----CAC- -5'
11701 3' -49.2 NC_003102.1 + 42661 0.71 0.946209
Target:  5'- ---aUGAACCcGGCUGACUUUUCa-- -3'
miRNA:   3'- uuuaGCUUGGaCCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 42736 0.68 0.987977
Target:  5'- --uUCGAuuacaACUUGuCUGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCU-----UGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 42901 1.03 0.026227
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 54309 0.77 0.700012
Target:  5'- cAAAUC-AACUUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 54600 0.9 0.161598
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUu-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 54794 0.85 0.308619
Target:  5'- uAAUCGAACCUGGCUGACUUUUUa-- -3'
miRNA:   3'- uUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 55987 0.95 0.076278
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 56079 0.91 0.133516
Target:  5'- cAGAUCGAACCUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 56129 0.66 0.997801
Target:  5'- --uUUGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 56224 0.66 0.996304
Target:  5'- cGAUCuGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uUUAG-CUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 61373 0.87 0.228059
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 61607 0.91 0.137233
Target:  5'- cGAAUCGAACCUGGCaGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGgCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 67119 0.96 0.070037
Target:  5'- uGAAUCGAACCUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 67216 1 0.039404
Target:  5'- uGAAUCGAACCUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 67314 1 0.038278
Target:  5'- cGAAUCGAACCUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 67404 1.04 0.024028
Target:  5'- cGAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.