miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 124 0.68 0.982503
Target:  5'- --cUCGAACgCgaGGCCGACgag-CGUGa -3'
miRNA:   3'- uuuAGCUUG-Ga-CCGGCUGaaaaGCAC- -5'
11701 3' -49.2 NC_003102.1 + 10515 0.66 0.997801
Target:  5'- --uUUGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10580 1.08 0.012612
Target:  5'- aGAAUCGAACCUGGCCGACUUUUCGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 10594 0.76 0.762521
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10656 0.94 0.090393
Target:  5'- cAAAUCaAACCUGGCCGACUUUUCGUGu -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 10735 1.01 0.035087
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 10821 0.94 0.087879
Target:  5'- uGAAUCuAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 23423 0.72 0.907111
Target:  5'- cAAUCGcccGGCCUGGCCGACUguuaCGg- -3'
miRNA:   3'- uUUAGC---UUGGACCGGCUGAaaa-GCac -5'
11701 3' -49.2 NC_003102.1 + 25830 0.85 0.293815
Target:  5'- cGAUCuGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAG-CUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 25974 1.07 0.013774
Target:  5'- cAGAUCGAACCUGGCCGACUUUUCGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26054 0.95 0.076278
Target:  5'- cAGAUCaAACCUGGCCGACUUUUCGUGa -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26113 1.02 0.028624
Target:  5'- aGAAUCGAACCUGGCCGACUUUUUGUGc -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26196 1.07 0.015489
Target:  5'- aGAAUCGAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26273 1.06 0.016425
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUGu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26332 0.85 0.293815
Target:  5'- cAAAUCGAAUUUGGCCGACUUUUUGg- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 26356 0.91 0.133516
Target:  5'- cGAAUCGAACgUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 26498 0.73 0.871244
Target:  5'- --uUCGAACCUGGCUaACUUUUCc-- -3'
miRNA:   3'- uuuAGCUUGGACCGGcUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 26576 0.75 0.801731
Target:  5'- --uUCGAACgUGuCUGACUUUUCGUGg -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26717 0.83 0.382179
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 36094 0.67 0.992021
Target:  5'- --uUCGAACCUGuCUGACUUUUUa-- -3'
miRNA:   3'- uuuAGCUUGGACcGGCUGAAAAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.