miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 112762 0.78 0.656902
Target:  5'- cAAUUGAACCUGGCa-ACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGGACCGgcUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 103651 0.88 0.20011
Target:  5'- cAAAUCGAACCUGGCCGACUcUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAaAAGcac -5'
11701 3' -49.2 NC_003102.1 + 61373 0.87 0.228059
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112469 0.86 0.265879
Target:  5'- --uUCGAACCUGGCUGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 25830 0.85 0.293815
Target:  5'- cGAUCuGAACgUGGCCGACUUUUCGUa -3'
miRNA:   3'- uUUAG-CUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112650 0.83 0.373452
Target:  5'- --uUCGAACCUGuCUGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCUUGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 103533 0.83 0.373452
Target:  5'- cAAAUCaAACCUGGCCGACUUUUUGa- -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 42591 0.82 0.409162
Target:  5'- uAAUCGAACCUGGCCGACcgcaaacUUGUGa -3'
miRNA:   3'- uUUAGCUUGGACCGGCUGaaa----AGCAC- -5'
11701 3' -49.2 NC_003102.1 + 89505 0.8 0.517329
Target:  5'- --uUUGAACgUGGCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 56079 0.91 0.133516
Target:  5'- cAGAUCGAACCUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 26356 0.91 0.133516
Target:  5'- cGAAUCGAACgUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGgACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 104344 0.92 0.122913
Target:  5'- cGAAUCGAACCUGGCCGACUUUUUa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 76346 1.03 0.027003
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 76473 1.02 0.032158
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 36205 0.98 0.049651
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 104630 0.97 0.058998
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 104513 0.97 0.064289
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112566 0.97 0.064289
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 55987 0.95 0.076278
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 103592 0.95 0.080731
Target:  5'- uAAAUCGAACCUGGCCGACUUUUUGa- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.