miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 10580 1.08 0.012612
Target:  5'- aGAAUCGAACCUGGCCGACUUUUCGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 25974 1.07 0.013774
Target:  5'- cAGAUCGAACCUGGCCGACUUUUCGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26196 1.07 0.015489
Target:  5'- aGAAUCGAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 26273 1.06 0.016425
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUGu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 103474 1.06 0.017416
Target:  5'- aAAAUCGAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 67404 1.04 0.024028
Target:  5'- cGAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 42901 1.03 0.026227
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUGa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 76346 1.03 0.027003
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 121899 1.03 0.027003
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 26113 1.02 0.028624
Target:  5'- aGAAUCGAACCUGGCCGACUUUUUGUGc -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 76473 1.02 0.032158
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10735 1.01 0.035087
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUGc -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 67314 1 0.038278
Target:  5'- cGAAUCGAACCUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 67216 1 0.039404
Target:  5'- uGAAUCGAACCUGGCCGACUUUUCGa- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 36205 0.98 0.049651
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 104630 0.97 0.058998
Target:  5'- cAAAUCGAACCUGGCCGACUUUUUGUu -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 97844 0.97 0.058998
Target:  5'- uGAUCGAACgUGGCCGACUUUUCGUGa -3'
miRNA:   3'- uUUAGCUUGgACCGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 104513 0.97 0.064289
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112566 0.97 0.064289
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 67119 0.96 0.070037
Target:  5'- uGAAUCGAACCUGGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.