Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11701 | 3' | -49.2 | NC_003102.1 | + | 55987 | 0.95 | 0.076278 |
Target: 5'- cAAAUCGAACCUGGCCGACUUUUCa-- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 26054 | 0.95 | 0.076278 |
Target: 5'- cAGAUCaAACCUGGCCGACUUUUCGUGa -3' miRNA: 3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 103592 | 0.95 | 0.080731 |
Target: 5'- uAAAUCGAACCUGGCCGACUUUUUGa- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 121816 | 0.95 | 0.085432 |
Target: 5'- --uUCGAACCUGGCCGACUUUUCGa- -3' miRNA: 3'- uuuAGCUUGGACCGGCUGAAAAGCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 10821 | 0.94 | 0.087879 |
Target: 5'- uGAAUCuAACCUGGCCGACUUUUCGUGc -3' miRNA: 3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 10656 | 0.94 | 0.090393 |
Target: 5'- cAAAUCaAACCUGGCCGACUUUUCGUGu -3' miRNA: 3'- -UUUAGcUUGGACCGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 97901 | 0.93 | 0.109991 |
Target: 5'- uGAUCGAACgUGGCCGACUUUUCGUa -3' miRNA: 3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 98015 | 0.93 | 0.109991 |
Target: 5'- uGAUCGAACgUGGCCGACUUUUCGUa -3' miRNA: 3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 97958 | 0.93 | 0.109991 |
Target: 5'- uGAUCGAACgUGGCCGACUUUUCGUa -3' miRNA: 3'- uUUAGCUUGgACCGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 104344 | 0.92 | 0.122913 |
Target: 5'- cGAAUCGAACCUGGCCGACUUUUUa-- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 26356 | 0.91 | 0.133516 |
Target: 5'- cGAAUCGAACgUGGCCGACUUUUCGa- -3' miRNA: 3'- -UUUAGCUUGgACCGGCUGAAAAGCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 56079 | 0.91 | 0.133516 |
Target: 5'- cAGAUCGAACCUGGCCGACUUUUUa-- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 61607 | 0.91 | 0.137233 |
Target: 5'- cGAAUCGAACCUGGCaGACUUUUCGUa -3' miRNA: 3'- -UUUAGCUUGGACCGgCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 54600 | 0.9 | 0.161598 |
Target: 5'- cAAAUCGAACCUGGCCGACUUUUUu-- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 103651 | 0.88 | 0.20011 |
Target: 5'- cAAAUCGAACCUGGCCGACUcUUCa-- -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAaAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 61373 | 0.87 | 0.228059 |
Target: 5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3' miRNA: 3'- -UUUAGcUUGGACCGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 89488 | 0.86 | 0.252737 |
Target: 5'- cAAAUCaAACCcGGCCGACUUUUCGUGg -3' miRNA: 3'- -UUUAGcUUGGaCCGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 112469 | 0.86 | 0.265879 |
Target: 5'- --uUCGAACCUGGCUGACUUUUCa-- -3' miRNA: 3'- uuuAGCUUGGACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 137198 | 0.85 | 0.293815 |
Target: 5'- cAAAUCGAACgUGGCCaACUUUUCGUGu -3' miRNA: 3'- -UUUAGCUUGgACCGGcUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 25830 | 0.85 | 0.293815 |
Target: 5'- cGAUCuGAACgUGGCCGACUUUUCGUa -3' miRNA: 3'- uUUAG-CUUGgACCGGCUGAAAAGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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