Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11701 | 3' | -49.2 | NC_003102.1 | + | 56129 | 0.66 | 0.997801 |
Target: 5'- --uUUGAACgUGuCUGACUUUUCGUa -3' miRNA: 3'- uuuAGCUUGgACcGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 76614 | 0.77 | 0.667739 |
Target: 5'- --uUUGAACgUGGCCGACUUUUCa-- -3' miRNA: 3'- uuuAGCUUGgACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 104771 | 0.77 | 0.667739 |
Target: 5'- --uUUGAACgUGGCCGACUUUUCa-- -3' miRNA: 3'- uuuAGCUUGgACCGGCUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 10580 | 1.08 | 0.012612 |
Target: 5'- aGAAUCGAACCUGGCCGACUUUUCGUGa -3' miRNA: 3'- -UUUAGCUUGGACCGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 56224 | 0.66 | 0.996304 |
Target: 5'- cGAUCuGAACgUGuCUGACUUUUCGUa -3' miRNA: 3'- uUUAG-CUUGgACcGGCUGAAAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 103792 | 0.66 | 0.996304 |
Target: 5'- --uUUGAACgCgu-CCGACUUUUCGUGa -3' miRNA: 3'- uuuAGCUUG-GaccGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 95636 | 0.68 | 0.98947 |
Target: 5'- ---cCGGACCcGGCaCGACUagUUUCGUu -3' miRNA: 3'- uuuaGCUUGGaCCG-GCUGA--AAAGCAc -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 42736 | 0.68 | 0.987977 |
Target: 5'- --uUCGAuuacaACUUGuCUGACUUUUCGUGa -3' miRNA: 3'- uuuAGCU-----UGGACcGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 112791 | 0.7 | 0.96623 |
Target: 5'- cGAAUCGAACgUGuCUGACUUUuuauagUCGUGg -3' miRNA: 3'- -UUUAGCUUGgACcGGCUGAAA------AGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 121959 | 0.74 | 0.838174 |
Target: 5'- --uUUGAACgUGGCCGACUugUUUCGa- -3' miRNA: 3'- uuuAGCUUGgACCGGCUGA--AAAGCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 89646 | 0.72 | 0.919627 |
Target: 5'- cAAAUUaAACCUGuCUGACUUUUCGUGu -3' miRNA: 3'- -UUUAGcUUGGACcGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 133286 | 0.68 | 0.986324 |
Target: 5'- cAAGUgGGacacaACCUGGCCGGCUUUUa--- -3' miRNA: 3'- -UUUAgCU-----UGGACCGGCUGAAAAgcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 96506 | 0.66 | 0.997801 |
Target: 5'- --cUCGAuucuaACCUGGCCGACa------- -3' miRNA: 3'- uuuAGCU-----UGGACCGGCUGaaaagcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 23423 | 0.72 | 0.907111 |
Target: 5'- cAAUCGcccGGCCUGGCCGACUguuaCGg- -3' miRNA: 3'- uUUAGC---UUGGACCGGCUGAaaa-GCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 67453 | 0.66 | 0.997372 |
Target: 5'- -uAUCuAAUCUGGCCGACUUUa---- -3' miRNA: 3'- uuUAGcUUGGACCGGCUGAAAagcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 42592 | 0.68 | 0.986324 |
Target: 5'- uGAAUUGAACUUGuCCGACUUUUUauaaGUGu -3' miRNA: 3'- -UUUAGCUUGGACcGGCUGAAAAG----CAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 26498 | 0.73 | 0.871244 |
Target: 5'- --uUCGAACCUGGCUaACUUUUCc-- -3' miRNA: 3'- uuuAGCUUGGACCGGcUGAAAAGcac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 104485 | 0.75 | 0.801731 |
Target: 5'- --uUCGAACgUGuCUGACUUUUCGUGg -3' miRNA: 3'- uuuAGCUUGgACcGGCUGAAAAGCAC- -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 128654 | 0.66 | 0.997372 |
Target: 5'- -uAUCGAACUUGGCCG-CgagcaUCGg- -3' miRNA: 3'- uuUAGCUUGGACCGGCuGaaa--AGCac -5' |
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11701 | 3' | -49.2 | NC_003102.1 | + | 112610 | 0.67 | 0.994054 |
Target: 5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3' miRNA: 3'- -UUUAGCUUGgACcGGCUGAAAAgCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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