miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 137233 0.77 0.689305
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUG-GaCCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 137198 0.85 0.293815
Target:  5'- cAAAUCGAACgUGGCCaACUUUUCGUGu -3'
miRNA:   3'- -UUUAGCUUGgACCGGcUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 137156 0.77 0.689305
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUCa-- -3'
miRNA:   3'- -UUUAGCUUG-GaCCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 133286 0.68 0.986324
Target:  5'- cAAGUgGGacacaACCUGGCCGGCUUUUa--- -3'
miRNA:   3'- -UUUAgCU-----UGGACCGGCUGAAAAgcac -5'
11701 3' -49.2 NC_003102.1 + 132780 0.69 0.975336
Target:  5'- ---aUGAACCUGuuaGACUUUUCGUGa -3'
miRNA:   3'- uuuaGCUUGGACcggCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 132701 0.69 0.975336
Target:  5'- ---aUGAACCUGuuaGACUUUUCGUGa -3'
miRNA:   3'- uuuaGCUUGGACcggCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 128654 0.66 0.997372
Target:  5'- -uAUCGAACUUGGCCG-CgagcaUCGg- -3'
miRNA:   3'- uuUAGCUUGGACCGGCuGaaa--AGCac -5'
11701 3' -49.2 NC_003102.1 + 121959 0.74 0.838174
Target:  5'- --uUUGAACgUGGCCGACUugUUUCGa- -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGA--AAAGCac -5'
11701 3' -49.2 NC_003102.1 + 121899 1.03 0.027003
Target:  5'- cAAAUCGAACCUGGCCGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 121816 0.95 0.085432
Target:  5'- --uUCGAACCUGGCCGACUUUUCGa- -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCac -5'
11701 3' -49.2 NC_003102.1 + 121675 0.76 0.762521
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112791 0.7 0.96623
Target:  5'- cGAAUCGAACgUGuCUGACUUUuuauagUCGUGg -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAA------AGCAC- -5'
11701 3' -49.2 NC_003102.1 + 112762 0.78 0.656902
Target:  5'- cAAUUGAACCUGGCa-ACUUUUCGUa -3'
miRNA:   3'- uUUAGCUUGGACCGgcUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112707 0.8 0.506978
Target:  5'- cGAAUCGAACgUGuCUGACUUUUCGUGg -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 112650 0.83 0.373452
Target:  5'- --uUCGAACCUGuCUGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCUUGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 112610 0.67 0.994054
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAgCAc -5'
11701 3' -49.2 NC_003102.1 + 112566 0.97 0.064289
Target:  5'- --uUCGAACCUGGCCGACUUUUCGUu -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 112469 0.86 0.265879
Target:  5'- --uUCGAACCUGGCUGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGGACCGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 107304 0.67 0.994902
Target:  5'- -cGUCGGGCgaGGCCGACgacaaucCGUa -3'
miRNA:   3'- uuUAGCUUGgaCCGGCUGaaaa---GCAc -5'
11701 3' -49.2 NC_003102.1 + 104771 0.77 0.667739
Target:  5'- --uUUGAACgUGGCCGACUUUUCa-- -3'
miRNA:   3'- uuuAGCUUGgACCGGCUGAAAAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.