miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 104677 0.68 0.995535
Target:  5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAa -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 97928 0.68 0.994764
Target:  5'- cCCGUcuauGAAAAGUCAGACAaguUGUgaUCGAAc -3'
miRNA:   3'- aGGCG----CUUUUCAGUCUGU---GCA--AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 97985 0.68 0.994764
Target:  5'- cCCGUcuauGAAAAGUCAGACAaguUGUgaUCGAAc -3'
miRNA:   3'- aGGCG----CUUUUCAGUCUGU---GCA--AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 59298 0.69 0.993888
Target:  5'- aUUGCGucguAAAAGUUuuuGACACGUUCGAAu -3'
miRNA:   3'- aGGCGC----UUUUCAGu--CUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 36072 0.7 0.985883
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137402 0.71 0.971583
Target:  5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3'
miRNA:   3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137326 0.71 0.971583
Target:  5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3'
miRNA:   3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89515 0.71 0.971583
Target:  5'- aCUGUuuGAcaaAAAGUUGGACGCGUUCAAAu -3'
miRNA:   3'- aGGCG--CU---UUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 91909 0.71 0.968441
Target:  5'- gUCGCGAAGcgguucGUguGACACGUUCAc- -3'
miRNA:   3'- aGGCGCUUUu-----CAguCUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 76454 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104611 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 121926 0.72 0.965059
Target:  5'- -aCGCguuuauGAAAAGUCAaACACGUUCAAAu -3'
miRNA:   3'- agGCG------CUUUUCAGUcUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 97733 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 97846 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 55947 0.72 0.95755
Target:  5'- --aGCGAAAcGUCAGACAaGUUCAAu -3'
miRNA:   3'- aggCGCUUUuCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89481 0.72 0.95341
Target:  5'- -aCaCGAAAAGUCAGACAgGUUUAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 61628 0.73 0.934174
Target:  5'- ---uUGAAacAAGUCAGACGCGUUCGAAu -3'
miRNA:   3'- aggcGCUU--UUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 96424 0.73 0.928682
Target:  5'- aUgGCGAuuccAAAGUgAGACGCGUUCGAc -3'
miRNA:   3'- aGgCGCU----UUUCAgUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 21247 0.73 0.928682
Target:  5'- uUCC-CGAAAAGUUuaaAGGCACGUUUAAc -3'
miRNA:   3'- -AGGcGCUUUUCAG---UCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26000 0.75 0.87493
Target:  5'- cCUGUuuacGAAAAGUCGGcCACGUUCAGAu -3'
miRNA:   3'- aGGCG----CUUUUCAGUCuGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.