miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 37557 0.67 0.998965
Target:  5'- uUCUGCGcuAAGUCcaAGACGC-UUCAAu -3'
miRNA:   3'- -AGGCGCuuUUCAG--UCUGUGcAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 42567 0.66 0.99916
Target:  5'- gUUCaCGAAAAGUCAGACAaguUGUaaUCGAAc -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGU---GCA--AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 42923 0.85 0.408732
Target:  5'- aCauCGAAAAGUCAGACGCGUUCAAAu -3'
miRNA:   3'- aGgcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 47269 0.78 0.755713
Target:  5'- -aCGCGAAAuAGUCAGGCGCGUUUu-- -3'
miRNA:   3'- agGCGCUUU-UCAGUCUGUGCAAGuuu -5'
11701 5' -47.6 NC_003102.1 + 54289 0.8 0.626384
Target:  5'- -aUGC-AAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- agGCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 54623 0.84 0.437181
Target:  5'- gUuuGCuAAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55913 0.68 0.997217
Target:  5'- gUUCGUGAAAAGUCuaacaaguucauGAaCAUGUUCAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGu-----------CU-GUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55947 0.72 0.95755
Target:  5'- --aGCGAAAcGUCAGACAaGUUCAAu -3'
miRNA:   3'- aggCGCUUUuCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 55968 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 56056 0.85 0.390421
Target:  5'- gUUUaCGAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 59298 0.69 0.993888
Target:  5'- aUUGCGucguAAAAGUUuuuGACACGUUCGAAu -3'
miRNA:   3'- aGGCGC----UUUUCAGu--CUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 61355 0.81 0.571655
Target:  5'- ----aGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- aggcgCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 61628 0.73 0.934174
Target:  5'- ---uUGAAacAAGUCAGACGCGUUCGAAu -3'
miRNA:   3'- aggcGCUU--UUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 63272 0.67 0.997755
Target:  5'- gUCCaGCGAAcucGAGUUuGACACGaUCGAu -3'
miRNA:   3'- -AGG-CGCUU---UUCAGuCUGUGCaAGUUu -5'
11701 5' -47.6 NC_003102.1 + 67138 0.78 0.724316
Target:  5'- ---aCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67142 0.66 0.99916
Target:  5'- aUCGCuuaucGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGCG-----CUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 67239 0.79 0.692096
Target:  5'- gUuuGCaAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67337 0.85 0.39951
Target:  5'- gUuuGCaAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67427 0.85 0.39951
Target:  5'- gUuuGCaAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 76324 0.86 0.347053
Target:  5'- -aCGUaGAAAAGUCAGACGCGUUCAAAu -3'
miRNA:   3'- agGCG-CUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.