miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 10411 0.67 0.998458
Target:  5'- gCCucaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGc--GCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 10573 0.66 0.999457
Target:  5'- -gCaCGAAAAGUCGGcCAgGUUCGAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10605 0.68 0.995535
Target:  5'- cCCGauaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC---GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10679 0.9 0.203488
Target:  5'- gUCUaCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10764 0.88 0.271017
Target:  5'- cCCGacuaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 10844 0.66 0.99916
Target:  5'- gUUCaUGAAAAGUCAGACAaGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 21247 0.73 0.928682
Target:  5'- uUCC-CGAAAAGUUuaaAGGCACGUUUAAc -3'
miRNA:   3'- -AGGcGCUUUUCAG---UCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 25808 0.67 0.998733
Target:  5'- aUCaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26000 0.75 0.87493
Target:  5'- cCUGUuuacGAAAAGUCGGcCACGUUCAGAu -3'
miRNA:   3'- aGGCG----CUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26081 0.85 0.39951
Target:  5'- -aCGCGucuacaAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- agGCGC------UUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26139 0.67 0.997755
Target:  5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26222 0.67 0.997755
Target:  5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26292 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26351 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26524 0.75 0.867033
Target:  5'- uUUCuCGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26545 0.67 0.997714
Target:  5'- -aUGCGccaucuaAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- agGCGC-------UUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26740 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 31236 0.66 0.999323
Target:  5'- --aGCGucGAGUUGGACACGaUCGAu -3'
miRNA:   3'- aggCGCuuUUCAGUCUGUGCaAGUUu -5'
11701 5' -47.6 NC_003102.1 + 36072 0.7 0.985883
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 36182 0.84 0.437181
Target:  5'- gUuuGCuAAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.