miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 137402 0.71 0.971583
Target:  5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3'
miRNA:   3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137326 0.71 0.971583
Target:  5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3'
miRNA:   3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137287 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137210 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137133 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137032 0.67 0.998733
Target:  5'- -aCaCGAAAAGUUGGcCACGUUCGAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 121926 0.72 0.965059
Target:  5'- -aCGCguuuauGAAAAGUCAaACACGUUCAAAu -3'
miRNA:   3'- agGCG------CUUUUCAGUcUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 121841 0.86 0.338803
Target:  5'- aCUaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 118011 0.67 0.997755
Target:  5'- --aGUGGAcAAGUCGGACACGaUCAu- -3'
miRNA:   3'- aggCGCUU-UUCAGUCUGUGCaAGUuu -5'
11701 5' -47.6 NC_003102.1 + 112814 0.8 0.626384
Target:  5'- gUUCaCGAAAAGUCAGACAgGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112730 0.68 0.996801
Target:  5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAu -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112618 0.81 0.571655
Target:  5'- gUCCaCGAcuauaaAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCU------UUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 112540 0.92 0.159569
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 112440 0.77 0.776032
Target:  5'- uUUCGUaacuAAAAGUCGGACACGUUCGAu -3'
miRNA:   3'- -AGGCGc---UUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 104677 0.68 0.995535
Target:  5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAa -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104611 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104488 0.79 0.692096
Target:  5'- cCCaCGAAAAGUCuGACACGUUCGu- -3'
miRNA:   3'- aGGcGCUUUUCAGuCUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 104321 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103818 0.67 0.998733
Target:  5'- aUCUaUGAAGAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 103628 0.86 0.347053
Target:  5'- gUUCaCGAAAAGUCGGACGCGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.