miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 97678 0.75 0.867033
Target:  5'- gUUCaCGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89415 0.82 0.507668
Target:  5'- ---aUGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 61355 0.81 0.571655
Target:  5'- ----aGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- aggcgCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112618 0.81 0.571655
Target:  5'- gUCCaCGAcuauaaAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCU------UUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 54289 0.8 0.626384
Target:  5'- -aUGC-AAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- agGCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103452 0.8 0.648376
Target:  5'- -aCGuCGAAAAGUCAGACACGUuaaaaUCGAAc -3'
miRNA:   3'- agGC-GCUUUUCAGUCUGUGCA-----AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104488 0.79 0.692096
Target:  5'- cCCaCGAAAAGUCuGACACGUUCGu- -3'
miRNA:   3'- aGGcGCUUUUCAGuCUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 47269 0.78 0.755713
Target:  5'- -aCGCGAAAuAGUCAGGCGCGUUUu-- -3'
miRNA:   3'- agGCGCUUU-UCAGUCUGUGCAAGuuu -5'
11701 5' -47.6 NC_003102.1 + 112440 0.77 0.776032
Target:  5'- uUUCGUaacuAAAAGUCGGACACGUUCGAu -3'
miRNA:   3'- -AGGCGc---UUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 36182 0.84 0.437181
Target:  5'- gUuuGCuAAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55968 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 56056 0.85 0.390421
Target:  5'- gUUUaCGAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103569 1.03 0.038239
Target:  5'- gUCCGCGAAAAGUCAGACACGUUUAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104321 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112540 0.92 0.159569
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137133 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137210 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137287 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 76324 0.86 0.347053
Target:  5'- -aCGUaGAAAAGUCAGACGCGUUCAAAu -3'
miRNA:   3'- agGCG-CUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103628 0.86 0.347053
Target:  5'- gUUCaCGAAAAGUCGGACGCGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.