miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 103510 1.07 0.019995
Target:  5'- gUCCGCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103569 1.03 0.038239
Target:  5'- gUCCGCGAAAAGUCAGACACGUUUAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104321 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26740 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112540 0.92 0.159569
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 10679 0.9 0.203488
Target:  5'- gUCUaCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10764 0.88 0.271017
Target:  5'- cCCGacuaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137287 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137133 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137210 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 121841 0.86 0.338803
Target:  5'- aCUaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 76324 0.86 0.347053
Target:  5'- -aCGUaGAAAAGUCAGACGCGUUCAAAu -3'
miRNA:   3'- agGCG-CUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 103628 0.86 0.347053
Target:  5'- gUUCaCGAAAAGUCGGACGCGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 56056 0.85 0.390421
Target:  5'- gUUUaCGAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26081 0.85 0.39951
Target:  5'- -aCGCGucuacaAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- agGCGC------UUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67427 0.85 0.39951
Target:  5'- gUuuGCaAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67337 0.85 0.39951
Target:  5'- gUuuGCaAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26351 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55968 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26292 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.