Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 31236 | 0.66 | 0.999323 |
Target: 5'- --aGCGucGAGUUGGACACGaUCGAu -3' miRNA: 3'- aggCGCuuUUCAGUCUGUGCaAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 137326 | 0.71 | 0.971583 |
Target: 5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3' miRNA: 3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 91909 | 0.71 | 0.968441 |
Target: 5'- gUCGCGAAGcgguucGUguGACACGUUCAc- -3' miRNA: 3'- aGGCGCUUUu-----CAguCUGUGCAAGUuu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 26740 | 0.94 | 0.131523 |
Target: 5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3' miRNA: 3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 103818 | 0.67 | 0.998733 |
Target: 5'- aUCUaUGAAGAGUCGGcCAgGUUCGAu -3' miRNA: 3'- -AGGcGCUUUUCAGUCuGUgCAAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 26139 | 0.67 | 0.997755 |
Target: 5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 63272 | 0.67 | 0.997755 |
Target: 5'- gUCCaGCGAAcucGAGUUuGACACGaUCGAu -3' miRNA: 3'- -AGG-CGCUU---UUCAGuCUGUGCaAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 118011 | 0.67 | 0.997755 |
Target: 5'- --aGUGGAcAAGUCGGACACGaUCAu- -3' miRNA: 3'- aggCGCUU-UUCAGUCUGUGCaAGUuu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 10605 | 0.68 | 0.995535 |
Target: 5'- cCCGauaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC---GCUUUUCAGUCUGUgcaAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 89515 | 0.71 | 0.971583 |
Target: 5'- aCUGUuuGAcaaAAAGUUGGACGCGUUCAAAu -3' miRNA: 3'- aGGCG--CU---UUUCAGUCUGUGCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 97928 | 0.68 | 0.994764 |
Target: 5'- cCCGUcuauGAAAAGUCAGACAaguUGUgaUCGAAc -3' miRNA: 3'- aGGCG----CUUUUCAGUCUGU---GCA--AGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 112730 | 0.68 | 0.996801 |
Target: 5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAu -3' miRNA: 3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 10844 | 0.66 | 0.99916 |
Target: 5'- gUUCaUGAAAAGUCAGACAaGUUUGAAu -3' miRNA: 3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 97985 | 0.68 | 0.994764 |
Target: 5'- cCCGUcuauGAAAAGUCAGACAaguUGUgaUCGAAc -3' miRNA: 3'- aGGCG----CUUUUCAGUCUGU---GCA--AGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 76640 | 0.67 | 0.998965 |
Target: 5'- aUCaaCGAAAAGUCGGcCAgGUUCGAu -3' miRNA: 3'- -AGgcGCUUUUCAGUCuGUgCAAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 55913 | 0.68 | 0.997217 |
Target: 5'- gUUCGUGAAAAGUCuaacaaguucauGAaCAUGUUCAAAu -3' miRNA: 3'- -AGGCGCUUUUCAGu-----------CU-GUGCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 59298 | 0.69 | 0.993888 |
Target: 5'- aUUGCGucguAAAAGUUuuuGACACGUUCGAAu -3' miRNA: 3'- aGGCGC----UUUUCAGu--CUGUGCAAGUUU- -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 137402 | 0.71 | 0.971583 |
Target: 5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3' miRNA: 3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 37557 | 0.67 | 0.998965 |
Target: 5'- uUCUGCGcuAAGUCcaAGACGC-UUCAAu -3' miRNA: 3'- -AGGCGCuuUUCAG--UCUGUGcAAGUUu -5' |
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11701 | 5' | -47.6 | NC_003102.1 | + | 26222 | 0.67 | 0.997755 |
Target: 5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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