Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11850 | 3' | -51 | NC_003266.2 | + | 595 | 0.66 | 0.815533 |
Target: 5'- uGC-CCGAUGAGGAAAuuaucaucgcuuccgGGAGCgAGAUu -3' miRNA: 3'- gCGcGGCUGUUCCUUU---------------UCUUGgUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 3361 | 0.66 | 0.840582 |
Target: 5'- aGUGUuuUGGgGAGGGAGAGGACCugcauaagGGGCa -3' miRNA: 3'- gCGCG--GCUgUUCCUUUUCUUGG--------UCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 5069 | 0.66 | 0.811543 |
Target: 5'- uGgGgCGACugcGGGAGuAGGgcGCCAGACg -3' miRNA: 3'- gCgCgGCUGu--UCCUUuUCU--UGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 5293 | 0.72 | 0.462992 |
Target: 5'- gGCGCCGAUcGGGAGcGGuucucgaccAGCCGGAUg -3' miRNA: 3'- gCGCGGCUGuUCCUUuUC---------UUGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 6193 | 1.1 | 0.001462 |
Target: 5'- gCGCGCCGACAAGGAAAAGAACCAGACc -3' miRNA: 3'- -GCGCGGCUGUUCCUUUUCUUGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 6296 | 0.68 | 0.702894 |
Target: 5'- gGgGCUGGCAGGucaGAAucGuGCCAGACg -3' miRNA: 3'- gCgCGGCUGUUC---CUUuuCuUGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 7048 | 0.69 | 0.678624 |
Target: 5'- cCGUGCCGACcAGGAcggguucccccuuGAAGAguACUGGAa -3' miRNA: 3'- -GCGCGGCUGuUCCU-------------UUUCU--UGGUCUg -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 7808 | 0.7 | 0.574694 |
Target: 5'- uGCgaGCCGAUggGGA--AGAACUGGAUc -3' miRNA: 3'- gCG--CGGCUGuuCCUuuUCUUGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 8401 | 0.73 | 0.42153 |
Target: 5'- aGCGgCGGCGAGGAcgcGcGCCGGGCg -3' miRNA: 3'- gCGCgGCUGUUCCUuuuCuUGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 8782 | 0.71 | 0.507606 |
Target: 5'- gCGCGCCGGCcgcggagaccuucagGAGGAGGAGAucgagcaguucaugACCgAGAUu -3' miRNA: 3'- -GCGCGGCUG---------------UUCCUUUUCU--------------UGG-UCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 9221 | 0.68 | 0.72569 |
Target: 5'- gGUGgUGGCGGGGGAGGGGGCCu-GCg -3' miRNA: 3'- gCGCgGCUGUUCCUUUUCUUGGucUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 9813 | 0.76 | 0.280226 |
Target: 5'- cCGCGCgGGCGAGGAGGAGGugCccguGGAg -3' miRNA: 3'- -GCGCGgCUGUUCCUUUUCUugG----UCUg -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 9839 | 0.7 | 0.597951 |
Target: 5'- aCGCGCuCGGCGAGGAuggccuGCUGGAUc -3' miRNA: 3'- -GCGCG-GCUGUUCCUuuucu-UGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 11122 | 0.66 | 0.821452 |
Target: 5'- gGUGCUgaggGACGAGGAuuucGAGgCGGACg -3' miRNA: 3'- gCGCGG----CUGUUCCUuuu-CUUgGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 11783 | 0.72 | 0.462992 |
Target: 5'- gGgGCCGGgacCGAGGggGAGAGCUAcuuuGACa -3' miRNA: 3'- gCgCGGCU---GUUCCuuUUCUUGGU----CUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 15843 | 0.73 | 0.42153 |
Target: 5'- aGCGCCGGC-AGGAcucGGAGAcgcgcgGCCAcGGCg -3' miRNA: 3'- gCGCGGCUGuUCCU---UUUCU------UGGU-CUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 16046 | 0.7 | 0.597951 |
Target: 5'- aGCGCaaauuCAAGGAAGAGAugcuCCAGGu -3' miRNA: 3'- gCGCGgcu--GUUCCUUUUCUu---GGUCUg -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 17074 | 0.67 | 0.791098 |
Target: 5'- gCGCGCCcgcGGCAGGGucAGAGGcgcgcgGCCGcGGCg -3' miRNA: 3'- -GCGCGG---CUGUUCCu-UUUCU------UGGU-CUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 17777 | 0.75 | 0.345737 |
Target: 5'- aCGgaGCCGGCGGGGGGAaccGGGuCCAGGCg -3' miRNA: 3'- -GCg-CGGCUGUUCCUUU---UCUuGGUCUG- -5' |
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11850 | 3' | -51 | NC_003266.2 | + | 17803 | 0.66 | 0.840582 |
Target: 5'- cCGUcCCGACGcGGAGGAGAcgcugcugacgcACaCGGACg -3' miRNA: 3'- -GCGcGGCUGUuCCUUUUCU------------UG-GUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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